Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq36 149 8e-30 seq67 138 1e-26 seq323 111 2e-18 seq13 98.7 1e-14 seq670 87.8 2e-11 >seq36 Length=116313 Score = 149 bits (164), Expect = 8e-30 Identities = 189/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||||||||| || || |||| ||| ||||| || |||||||| |||| |||||| Sbjct 38914 CTGGTCGACGTAACGGGCGGTGTTGTTGAAGACACGAAGCATGGGAACGATACCGTTGCT 38973 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 | ||||||||||| || | ||||| ||| | | || | ||| | || || Sbjct 38974 GACACCGTTGGTGCCGGCAATGTAGGAGCCAGTACCTCGAATGCAGTGAATGTTCAAACC 39033 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||||| ||||| | ||||||||| | || || ||||| |||||||| ||||| || Sbjct 39034 AATGCCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAAATGCCGTC 39093 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||||||||| |||||||| || || || || |||||| || ||||| | || || Sbjct 39094 GATCGAGTCATCCTTCATGGTAACAAGGAAACAGGACGAGAGCTGTGGGTGGGGAGTACC 39153 Query 1630305 GGCGTTGAAGAGCGTGGGCG 1630324 ||||||||||| || |||| Sbjct 39154 AGCGTTGAAGAGGGTTGGCG 39173 >seq67 Length=86059 Score = 138 bits (152), Expect = 1e-26 Identities = 204/286 (71%), Gaps = 5/286 (2%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 |||||||||||| ||| | |||||| |||| ||| |||||||| || || ||||| Sbjct 4656 ACCTTCGTCGCGTGAGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATAAGACCACGCTT 4715 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||| ||||||| | ||| ||| ||||| ||||| ||||| || |||||||| Sbjct 4716 CTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGATACCCTCAACTGCGGCAAA 4775 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 | | | ||| || ||||| |||||| | || || | ||||||| | ||||| Sbjct 4776 GGCAACGAGACGTTCGGCGAAGGTGGCTTTGCGGTC---GCTGATCCAACGAAGAGCCCA 4832 Query 869359 GTCGGCCTTTTTCCTCACCGAC-GGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTT 869417 ||||||||| | | | | |||| || | || |||| |||| ||||||| || | Sbjct 4833 GTCGGCCTTCTGCTTGA-CGACGGGGATGGTCTCGACGGCGTCAAAGAGGAATTCTCGCT 4891 Query 869418 CGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | || || | ||||||||||| |||||||| || ||||| Sbjct 4892 GCTCAGGCTCACGAATGTAGGTGTCGATGAGGAGCGAGTAAGTCTC 4937 >seq323 Length=11867 Score = 111 bits (122), Expect = 2e-18 Identities = 271/411 (66%), Gaps = 0/411 (0%) Strand=Plus/Plus Query 1573776 CTCCCGTGGATCGAAAAGTATCGCCCTATGGTGCTCGACGACATTGTCGGCAACGAGCAC 1573835 || || ||| ||||||||||||| || | ||||| ||| | ||||| ||| | || Sbjct 10442 CTTCCATGGGTCGAAAAGTATCGACCATTACGACTCGATGACGTGGTCGGAAACAAAGAC 10501 Query 1573836 GCCGTCGCCTATCTCAGAGCGCTGGCTGCCGACGGCGACATGCCCAACCTCTTGCTGGCG 1573895 || | | | || | | | | ||||||| || || | ||| | | || Sbjct 10502 ACCATTGACCGACTGAAGGTGATTCAGAACGACGGCAACTGTCCGCATCTCCTAATCTCG 10561 Query 1573896 GGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCTTGGGC 1573955 |||| ||| || | || |||||||| || ||||||||||||| || | ||| Sbjct 10562 GGTCTGCCGGGTATCGGAAAGACCACTTCGGTCCTCTGTCTGGCGCGTGCGCTTCTCGGC 10621 Query 1573956 GCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGTC 1574015 | ||| | | || | ||||||||||||||||| || |||||||| || ||||| || Sbjct 10622 GATGCCTACAAGGAAGGTGTGCTCGAACTCAACGCATCCGACGAGCGAGGTGTCGATATC 10681 Query 1574016 GTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCGGACGCCAC 1574075 || || || | |||||| || || |||| | || || ||||| || | || Sbjct 10682 GTCCGAAACAAGATCAAGAACTTTGCTCAGAAGAAGGTCTCTCTCCCGCCAGGCAGGCAT 10741 Query 1574076 AAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTGCGG 1574135 ||| | |||| ||||| |||||||| | | || | || || |||||||| || || Sbjct 10742 AAGATTGTCATTCTCGATGAGGCCGATAGTATGACACCAGCAGCGCAGCAGGCTCTTCGT 10801 Query 1574136 TCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAAC 1574186 |||||||| | || ||||||| || || || | | || |||||| Sbjct 10802 CGAACCATGGAGATCTACTCCAACACAACACGTTTCTGCTTCGCCTGCAAC 10852 >seq13 Length=186657 Score = 98.7 bits (108), Expect = 1e-14 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| || || ||| | | ||| ||||| || |||||||||||||| |||| || Sbjct 91992 GCTTGGAAAGCTCACCGGGGAGGATGAGGCGGACAGCGGTCTGGATCTCTCGCGAAGAGA 92051 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||| || || || | |||||| ||| ||||||| |||| | Sbjct 92052 TGGTCGACTTCTTGTTGTAGGAAGCGAGCTTGGAGGCCTCAGTGGCGATGCGCTCGAAGA 92111 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| | || || ||||| | | | ||| | |||||||||||| || |||||||| Sbjct 92112 TGTCCTGAACGAAGGAGTTAAGAATGGCCATGGCCTTGTTGGAGATACCAGTGTCGGGGT 92171 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 | ||||||||||| || ||||||| | | ||||| Sbjct 92172 GAACCTGCTTGAGAACACGGTAGATGTAGGTGGAGTA 92208 >seq670 Length=1259 Score = 87.8 bits (96), Expect = 2e-11 Identities = 206/311 (66%), Gaps = 0/311 (0%) Strand=Plus/Minus Query 507579 CGCTCCAGATCGGGTGGTCGGTCGAGCGCCACCTGCGCGCGGGCGACGCCGTGGTGATGA 507638 |||| ||| ||| ||| |||||||||||||| | || ||| | | || | | Sbjct 880 CGCTACAGCCCGGCTGGATTGTCGAGCGCCACCTCAAGGATGGTGACTACATTCTGTTCA 821 Query 507639 ACCGGCAGCCGTCGCTGCACATGGGCTCCATGCTCATGCACAAGGTGGTGCCCATGCCCG 507698 |||| ||||| || |||||| | || ||| | ||| | ||| || |||| | Sbjct 820 ACCGTCAGCCCTCCTTGCACAAGATGTCGATGATGTCGCATAGGGTCAAGCTCATGGACT 761 Query 507699 GGCGCACCATGCGATTCAACCTGGCCGTCACGGGCACCTACAACGCCGACTTTGACGGCG 507758 ||| | || ||||||| || || | ||||||||||| ||||| || | Sbjct 760 ACTCGACCTTCCGTCTCAACCTCAGTGTAACACCTCCATACAACGCCGATTTTGATGGTG 701 Query 507759 ACGAGATGAACCTGCACGTGCCCCAGTCCGAGACGGCGCGCGCCGAGGTGACGCACACCA 507818 ||||||||||| ||||||| || ||| ||| | | || |||||| | |||| | | Sbjct 700 ACGAGATGAACTTGCACGTTCCTCAGAGCGAAGAGACCCGTGCCGAGCTTTCGCAGATCG 641 Query 507819 TGAGCGTGTCGCTCAAGACCGTGTCGCCGCAGGCCAACAAGCCCATCATCGGCCTGGTCA 507878 | ||| | | ||| ||| || || ||||||||||||||| |||| ||| | || Sbjct 640 CATGGGTGCCTCGACAGATCGTTTCACCTCAGGCCAACAAGCCCGTCATGGGCATCGTGC 581 Query 507879 TGGACGCCCTC 507889 |||| | ||| Sbjct 580 AGGACACTCTC 570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106018114365537