Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq23 131 2e-25 seq52 113 4e-20 seq53 104 2e-17 >seq23 Length=140287 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||||| || || ||||| || || ||||| || || | | Sbjct 2233 ATGCAGATCTTTGTCAAGACGCTTACTGGCAAAACGATCACACTCGAGGTGGAGAGCTCG 2292 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| ||||| || ||||| ||||| || |||||||| || Sbjct 2293 GACACCATTGACAATGTCAAAGCCAAGATTCAGGACAAGGAAGGTATTCCTCCCGACCAG 2352 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || |||||||||||||| || |||||| |||||||| ||| |||| ||||| || Sbjct 2353 CAGCGTTTGATCTTTGCTGGTAAACAGTTGGAGGATGGACGAACTCTGTCTGATTACAAT 2412 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| || | ||| | || ||||| |||| || || Sbjct 2413 ATTCAGAAGGAGAGCACCTTGCACCTAGTTTTGCGTCTGCGTGGCGG 2459 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || |||||||| || || || ||||| || || | || Sbjct 1549 ATGCAGATCTTCGTAAAGACTCTGACCGGTAAGACCATCACCCTCGAGGTTGAGTCTTCC 1608 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || ||||||||||| Sbjct 1609 GACACCATTGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGGATCCCTCCCGATCAG 1668 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | || |||||||| || ||||| |||||| ||| | || || || ||| Sbjct 1669 CAGCGTCTCATTTTTGCCGGAAAGCAGCTTGAGGATGGACGAACTCTTTCGGACTACAAC 1728 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || |||||||| ||||| || |||||||| Sbjct 1729 ATCCAAAAGGAGTCGACCCTGCACTTGGT 1757 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || ||||| || || || || || || | ||||| || | | Sbjct 2005 ATGCAAATCTTTGTCAAGACGCTCACAGGAAAGACCATCACTTTGGAAGTCGAGTCTTCG 2064 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || || || || ||||||||||| Sbjct 2065 GACACGATCGACAATGTCAAGGCCAAGATCCAGGATAAGGAGGGTATTCCTCCCGATCAG 2124 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| | |||||||| || || ||| |||| || | | | | || ||||| ||| Sbjct 2125 CAACGACTCATCTTTGCTGGTAAGCAGTTGGAAGACGGTCGCACCCTTTCGGATTACAAC 2184 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| |||||| || | ||| | || ||||||||||| || || Sbjct 2185 ATTCAGAAGGAAAGCACCTTGCACCTTGTCTTGCGATTGCGAGGTGG 2231 Score = 98.7 bits (108), Expect = 9e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || | ||||| || || |||||||||||||| || || | Sbjct 1777 ATGCAGATTTTCGTCAAGACCTTGACCGGCAAGACCATTACGCTCGAAGTCGAGTCCTCG 1836 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||| | |||||||| ||||| ||||| || || || || || Sbjct 1837 GACACTATCGACAACGTTAAGGC-CAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCA 1895 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| | |||||||| || || ||||| || || ||| | | || || || || Sbjct 1896 GCAGCGTCTTATCTTTGCTGGAAAGCAGCTCGAAGACGGCCGAACCCTCTCGGACTACAA 1955 Query 24883 CATTCAAAAGGAA 24895 ||| || |||||| Sbjct 1956 CATCCAGAAGGAA 1968 >seq52 Length=95535 Score = 113 bits (124), Expect = 4e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| ||||||| || || ||||| || || || ||||| || || | | Sbjct 17850 GATGCAGATCTTTGTTAAAACCCTCACGGGTAAGACCATCACCCTCGAGGTCGAGTCTTC 17791 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| ||||| || || || ||||| Sbjct 17790 GGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCA 17731 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| | ||||| ||||| || ||||| || ||| | | | | || || || || Sbjct 17730 GCAGCGTCTCATCTTCGCCGGTAAGCAGCTCGAAGATGGTCGTACCCTCTCGGACTACAA 17671 Query 24883 CATTCAAAAGGAATCGACACTACAC 24907 ||| || |||||||| || || ||| Sbjct 17670 CATCCAGAAGGAATCCACCCTTCAC 17646 >seq53 Length=94643 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | ||||| || || |||||||||||||| || || | Sbjct 56548 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACCATTACGCTCGAAGTCGAGTCCTCG 56489 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || ||||| || || Sbjct 56488 GACACTATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 56429 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | |||||||| || || ||||| || ||| | | | | || || || ||| Sbjct 56428 CAGCGTCTTATCTTTGCAGGCAAGCAGCTTGAAGATGGCCGTACCCTTTCCGACTACAAC 56369 Query 24884 ATTCAAAAGGAATCGAC 24900 ||||| ||||| || || Sbjct 56368 ATTCAGAAGGAGTCCAC 56352 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || ||||| || || || || ||||| || || || | Sbjct 56777 GATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTC 56718 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || ||||| || ||||| ||||| || || |||||||| Sbjct 56717 GGACACCATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGCATCCCACCCGATCA 56658 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || | ||||| || || || ||||| || ||| | | | | || || || || Sbjct 56657 GCAGCGACTCATCTTCGCTGGTAAGCAGCTCGAAGATGGCCGCACCCTCTCGGACTACAA 56598 Query 24883 CATTCAAAAGGAATCGACACTACAC 24907 ||| || ||||| || || || ||| Sbjct 56597 CATCCAGAAGGAGTCCACCCTCCAC 56573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449820774361080