Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq35 141 8e-29 seq53 87.8 1e-12 >seq35 Length=120953 Score = 141 bits (156), Expect = 8e-29 Identities = 207/293 (71%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 34313 TGAGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCAT 34372 |||| || ||||| ||||| | || || || | || |||||| |||||| || | Sbjct 116200 TGAGATCGGTCTCGGGGTTCTTGCAATCACCGCAGAGGACGAACTTGTCGATGAAGCCGT 116259 Query 34373 CAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTT 34432 | ||||| || | | ||| |||||||| |||||||| ||| |||| || || | Sbjct 116260 CGAGCAGCTCGCGAAGACGGTCGGCGTCGTGGGCACCGTTGACAATGTATCGGTCATTCT 116319 Query 34433 TGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGG 34492 | | |||| | || || ||||| ||||| || || |||||||| || || || ||| Sbjct 116320 TCTCGTCGAACGAGGTCTGGGCGCCGAGCTCACAACCAAAGTACTTGGTTGGATAGGTGG 116379 Query 34493 CCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGT 34552 ||||| | |||| ||||| |||| ||||||| ||||||||||||||| |||| Sbjct 116380 GAGGACGGCTGAGCGAACGAGCGATGTCGGCCATGTTGGGGATGACAGTCTTGATACCGT 116439 Query 34553 TGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAAC 34605 | || || ||||||| ||||| | | | | ||||| ||| ||||||||| Sbjct 116440 TACCTTTGCCTTCGATCTTGGTGGTAAGGAGAGGCATGCGGTAACGGTAGAAC 116492 >seq53 Length=94643 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||| ||||| |||||||| |||||||| ||||| ||| | Sbjct 56548 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACCATTACGCTCGAAGTCGAGTCCTCG 56489 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| ||| | | || || |||||| ||||| || ||| | || || || Sbjct 56488 GACACTATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 56429 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | ||||| | ||| || || ||||| || |||| | | || | | || |||||| Sbjct 56428 CAGCGTCTTATCTTTGCAGGCAAGCAGCTTGAAGATGGCCGTACCCTTTCCGACTACAAC 56369 Query 110453 ATTCAAAAAGAATCTACGTTGCA 110475 ||||| || || || || ||||| Sbjct 56368 ATTCAGAAGGAGTCCACCTTGCA 56346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412772864582873