Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq67 174 2e-37 seq13 125 1e-22 seq36 122 1e-21 seq323 113 7e-19 seq670 93.3 7e-13 >seq67 Length=86059 Score = 174 bits (192), Expect = 2e-37 Identities = 235/327 (72%), Gaps = 3/327 (1%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 |||||||||||| ||| | |||||| ||| ||| |||||||| || || ||||| Sbjct 4656 ACCTTCGTCGCGTGAGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATAAGACCACGCTT 4715 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||| ||||||| ||| ||| ||||| ||||| ||||| || |||||||| Sbjct 4716 CTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGATACCCTCAACTGCGGCAAA 4775 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | | ||||| || ||||| || ||| | || || | ||||||| | ||||| Sbjct 4776 GGCAACGAGACGTTCGGCGAAGGTGGCTTTGCGGTC---GCTGATCCAACGAAGAGCCCA 4832 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 || ||||| | | | || ||| | || |||| |||| ||||||| || || Sbjct 4833 GTCGGCCTTCTGCTTGACGACGGGGATGGTCTCGACGGCGTCAAAGAGGAATTCTCGCTG 4892 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 | || || | |||||||||||||||||||||||| ||||| ||||| ||||| || Sbjct 4893 CTCAGGCTCACGAATGTAGGTGTCGATGAGGAGCGAGTAAGTCTCGGAGTGAATGTTCTC 4952 Query 794640 GATGGCGATCTGGAAGCCATAAAAGCA 794666 || ||||||||| ||||| ||||| Sbjct 4953 CATCATGATCTGGAAACCATAGAAGCA 4979 >seq13 Length=186657 Score = 125 bits (138), Expect = 1e-22 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 |||||||||| | ||||||||| || |||| ||||||| ||| || || ||| | | || Sbjct 91956 ACTTGGTGACCGACTTGGTACCTTCGGAGATGGCGTGCTTGGAAAGCTCACCGGGGAGGA 92015 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCG 1485592 | ||||| || |||||||||||||| || | ||| || |||||| | | Sbjct 92016 TGAGGCGGACAGCGGTCTGGATCTCTCGCGAAGAGATGGTCGACTTCTTGTTGTAGGAAG 92075 Query 1485593 CCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGA 1485652 | || | |||||| ||| ||||||| |||| ||||| | || || ||||| | | Sbjct 92076 CGAGCTTGGAGGCCTCAGTGGCGATGCGCTCGAAGATGTCCTGAACGAAGGAGTTAAGAA 92135 Query 1485653 TCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 | | ||| | ||||||||||| || ||||||||| ||||||||||| || Sbjct 92136 TGGCCATGGCCTTGTTGGAGATACCAGTGTCGGGGTGAACCTGCTTGAGAAC 92187 >seq36 Length=116313 Score = 122 bits (134), Expect = 1e-21 Identities = 183/260 (70%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||| || || || |||| ||| ||||| || |||||||| || | |||||| Sbjct 38914 CTGGTCGACGTAACGGGCGGTGTTGTTGAAGACACGAAGCATGGGAACGATACCGTTGCT 38973 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 | ||||||||||| || | ||||| ||| | | || | ||| | || || Sbjct 38974 GACACCGTTGGTGCCGGCAATGTAGGAGCCAGTACCTCGAATGCAGTGAATGTTCAAACC 39033 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||||| ||||| | ||||||||| | || || | || || || ||||| ||||| || Sbjct 39034 AATGCCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAAATGCCGTC 39093 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||||||||| |||||||| | || || || |||||| || ||| | | || || Sbjct 39094 GATCGAGTCATCCTTCATGGTAACAAGGAAACAGGACGAGAGCTGTGGGTGGGGAGTACC 39153 Query 2073780 GGCATTGAAGAGCGTGGGCG 2073799 || |||||||| || |||| Sbjct 39154 AGCGTTGAAGAGGGTTGGCG 39173 >seq323 Length=11867 Score = 113 bits (124), Expect = 7e-19 Identities = 276/413 (67%), Gaps = 4/413 (1%) Strand=Plus/Plus Query 2018913 CTCCCGTGGATCGAAAAGTACCGCCCGACAGTGCTCGACGACATCGTGGGCAACGAGCAC 2018972 || || ||| |||||||||| || || | ||||| ||| | || || ||| | || Sbjct 10442 CTTCCATGGGTCGAAAAGTATCGACCATTACGACTCGATGACGTGGTCGGAAACAAAGAC 10501 Query 2018973 GCCGTTGCCTACCTCAAGGCGCTGGCCGCCGACGGCAACATGCCCAACCTCTTGCTGGCG 2019032 || ||| | || |||| | | |||||||||| || | ||| | | || Sbjct 10502 ACCATTGACCGACTGAAGGTGATTCAGAACGACGGCAACTGTCCGCATCTCCTAATCTCG 10561 Query 2019033 GGCCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGCCTGGCGCGCGTGCTCTTGGGC 2019092 || | ||| || | || |||||||| || || |||||||| | ||| | ||| Sbjct 10562 GGTCTGCCGGGTATCGGAAAGACCACTTCGGTCCTCTGTCTGGCGCGTGCGCTTCTCGGC 10621 Query 2019093 GCGGCCGCCGACGAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGTC 2019152 | ||| | | || | |||||||||||||| || || |||||||| || || || || Sbjct 10622 GATGCCTACAAGGAAGGTGTGCTCGAACTCAACGCATCCGACGAGCGAGGTGTCGATATC 10681 Query 2019153 GTGCGTAGAATCATCAAGCATCACGCTTCGAAAAGAATCGACCTGCCGCCCGGCCGCCAC 2019212 || || | | |||||| | ||| ||| | || || ||||| ||| | || Sbjct 10682 GTCCGAAACAAGATCAAGAACTTTGCTCAGAAGAAGGTCTCTCTCCCGCCAGGCAGGCAT 10741 Query 2019213 AAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCCGA 2019272 ||| | |||| |||||||||||||| | | || | || || |||||||| || || Sbjct 10742 AAGATTGTCATTCTCGATGAGGCCGATAGTATGACACCAGCAGCGCAGCAGGCTCTTCG- 10800 Query 2019273 TCG-ACCATGGAAAAGTACACCAACACGACGCGGTT-TGCGCTGGCCTGCAAC 2019323 ||| |||||||| | ||| ||||||| || || || ||| | ||||||||| Sbjct 10801 TCGAACCATGGAGATCTACTCCAACACAACACGTTTCTGC-TTCGCCTGCAAC 10852 >seq670 Length=1259 Score = 93.3 bits (102), Expect = 7e-13 Identities = 214/315 (68%), Gaps = 8/315 (3%) Strand=Plus/Minus Query 429508 CGCTCCAGATCGGGTGGACCGTCGAGCGCCACCTGCGCACCGGCGACCCCGTGGTCATGA 429567 |||| ||| ||| |||| |||||||||||||| || ||| | | | | | Sbjct 880 CGCTACAGCCCGGCTGGATTGTCGAGCGCCACCTCAAGGATGGTGACTACATTCTGTTCA 821 Query 429568 ACCGGCAGCCGTCGCTCCACATGGGGTCGATGCTCAACCACAAGGTGGTGCCCATGCCCG 429627 |||| ||||| || | |||| | ||||||| | || | ||| || |||| | Sbjct 820 ACCGTCAGCCCTCCTTGCACAAGATGTCGATGATGTCGCATAGGGTCAAGCTCATGGACT 761 Query 429628 G-TCGCACCTTCCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGC 429686 ||| |||||||| |||||||| || || | ||||||||||| ||||| || Sbjct 760 ACTCG-ACCTTCCGTCTCAACCTCAGTGTAACACCTCCATACAACGCCGATTTTGATGGT 702 Query 429687 GACGAGATGAACCTGCACGTGCCCCAG-TCGGAGATGGCACGCGCCGA--AGTCGCCCAC 429743 |||||||||||| ||||||| || ||| || ||| | | || ||||| |||| | Sbjct 701 GACGAGATGAACTTGCACGTTCCTCAGAGCGAAGA-GACCCGTGCCGAGCTTTCGCAGAT 643 Query 429744 ACCATGGGCGTGGCCCTCAAGGCCGTGTCGCCGCAGGCCAACAAGCCCATCATCGGGCTC 429803 ||||| ||| | | || ||| || || ||||||||||||||| |||| || || Sbjct 642 CGCATGG--GTGCCTCGACAGATCGTTTCACCTCAGGCCAACAAGCCCGTCATGGGCATC 585 Query 429804 GTGATGGACGCCCTC 429818 ||| |||| | ||| Sbjct 584 GTGCAGGACACTCTC 570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914793217122179