Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq52 102 6e-17 seq23 98.7 8e-16 >seq52 Length=95535 Score = 102 bits (112), Expect = 6e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 ||||| |||||||| || || ||||| || |||| | ||| ||| ||| ||||| || Sbjct 17647 TGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGACCATCTTCGAGCTGC 17706 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || || || | || | | |||||||| || |||||||| || ||||| || | || Sbjct 17707 TTACCGGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTG 17766 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 ||||| | || | ||||| ||| || || || || || || || || || || Sbjct 17767 GCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTACCCGTG 17826 Query 29764 AAGGTTTTAACAAATATCTGCATTTT 29789 | |||||||||||| |||||||| || Sbjct 17827 AGGGTTTTAACAAAGATCTGCATCTT 17852 >seq23 Length=140287 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 29595 TTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATA 29654 ||| || |||||||| ||||||| || ||||||| || || | || || |||||| | Sbjct 2196 TTCCTTCTGAATGTTGTAATCCGAAAGGGTGCGACCGTCTTCCAACTGCTTACCAGCAAA 2137 Query 29655 TATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGT 29714 || | || ||||||||| || ||||||||||| || || || | || |||||| | Sbjct 2136 GATGAGTCGTTGCTGATCGGGAGGAATACCCTCCTTATCCTGGATCTTGGCCTTGACATT 2077 Query 29715 TTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAAC 29774 || | ||||| ||| || ||||| | ||| || || || || || | || || || Sbjct 2076 GTCGATCGTGTCCGAAGACTCGACTTCCAAAGTGATGGTCTTTCCTGTGAGCGTCTTGAC 2017 Query 29775 AAATATCTGCAT 29786 ||| || ||||| Sbjct 2016 AAAGATTTGCAT 2005 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 29596 TCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATAT 29655 || || ||||| || ||||| | | || || ||| || | ||||| |||||| | Sbjct 2423 TCCTTCTGAATATTGTAATCAGACAGAGTTCGTCCATCCTCCAACTGTTTACCAGCAAAG 2364 Query 29656 ATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGT 29714 ||||| | ||||| || || |||||||| || ||||| || ||| || | ||||||| | Sbjct 2363 ATCAAACGCTGCTGGTCGGGAGGAATACCTTCCTTGTCCTG-AATCTTGGCTTTGACATT 2305 Query 29715 TTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAAC 29774 || | ||||| || || || || || || || ||||||||||| | || || || Sbjct 2304 GTCAATGGTGTCCGAGCTCTCCACCTCGAGTGTGATCGTTTTGCCAGTAAGCGTCTTGAC 2245 Query 29775 AAATATCTGCAT 29786 ||| |||||||| Sbjct 2244 AAAGATCTGCAT 2233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385155063531201