Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq36 246 3e-60 seq23 136 4e-27 seq53 127 2e-24 seq52 107 2e-18 seq100 102 8e-17 >seq36 Length=116313 Score = 246 bits (272), Expect = 3e-60 Identities = 1097/1714 (64%), Gaps = 35/1714 (2%) Strand=Plus/Plus Query 148061 CTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCTTC-ATCT 148119 |||| |||||| || || || ||||||||||| || |||| | || || | |||| Sbjct 37663 CTGGCAAATGAAAGCACCTCGATCAGCGGCCATGTCGATGA-TAGCCTTCTGGGAGATCT 37721 Query 148120 CCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCG 148179 |||| | |||||||| ||| ||||||| | || ||||| || | | ||| | | Sbjct 37722 CCCAAACAGTCTTGTAGAGCTTCTTGATACGGTCAGGAATACCAGGAACGTTCTGGATGG 37781 Query 148180 AGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCA 148239 | || | ||| || | ||| | || ||| ||| | | | |||||| | Sbjct 37782 AACCACCGTGAGCGATAATACGGTTCTTCATGGTGTCGTTCCACAATCCTTGCTCGACGA 37841 Query 148240 GGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGA- 148298 | || || || | | || || ||||| || || || || || || || || ||| Sbjct 37842 GTTCGCGGAGCAACCAAGGGTTGACGACCTGGAATTCACCAGCAAGGACACGACG-AGAG 37900 Query 148299 TACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTT 148358 || | |||| || | || || || | |||||| ||||| ||||| || | | Sbjct 37901 TAGATGTTGGAGGTGTAGGGCTCGAAGCATTCGTTGAAACCCAAGATCTGACTTGTGGAT 37960 Query 148359 GCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGC 148418 || || |||||| || | || ||||||||||| | |||| | || || ||| | Sbjct 37961 GCGGTAGGCATGGGAGCGAGCAAGAGCGAGTTGCGAAGACCGTGCTTGGCGATCTTGGCC 38020 Query 148419 TTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGA 148478 || || | ||||||||||| || || || || || ||||||||||||||| || Sbjct 38021 TTGAGCGAAGCCCAGTCCCAAAGATCGGAAGGGGTAACACCCCACATGTCGTACTGGAGT 38080 Query 148479 ATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGT 148538 || || || ||| || |||| | ||| | || ||| || |||| Sbjct 38081 TCACCCTGGGAGGCAGGGGAACCGGCGTAGGTCTCGTAGGTGCCATGCTCCTGGGCCAAC 38140 Query 148539 TCGCA-GCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAG 148597 ||||| | |||| ||||| ||| ||| ||| || |||||| || || ||| | || Sbjct 38141 TCGCACGATCGC-TCGAGAGCGGCGTGGTAGATGGTCTCGAAGATCTGGACGTTCA--AG 38197 Query 148598 CGCCGCCGACTCGCTTTCGT--ACGGCATA-CGCAGCCGCACAAACGCGTCGGCAAGGCC 148654 || || | |||| | | ||| || | || || || || ||||| || || Sbjct 38198 CGACGA-GCCTCGGGCGACTCAAAGGCGTAACCCATGATCATGAAGGCATCGGCGAGACC 38256 Query 148655 CTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCGG 148714 ||| || || | |||||||| ||||| ||||| || | || || ||| | || Sbjct 38257 CTGGACACCGATACCAATGGGGCGGTGACGCATGTTAGAACGACGAGCCTCCTCAACAGG 38316 Query 148715 ATAGTGGTTGCGGTCGATGATCTTGT-CAAGATTGCGCACCACCACCTTTGTAATTCTGC 148773 |||| |||| |||||||| |||| |||| | ||| | |||| | || | Sbjct 38317 GTAGTAGTTGATATCGATGATTTTGTTCAAGTTCTTGCAG-ATAGCCTTGGCAACCTCGT 38375 Query 148774 GCAGCAATTCAAAATCGTA---CTTGTCATCTA---CGATGCATCGGTTCACGGCGATAG 148827 ||| | || ||||| |||| | | ||||| | | | ||||| | Sbjct 38376 GCAAACGCTTGAAGTCGTAGACCTTGGTAACGGGGTCGATGAAGGTGGGAAGAGCGATGG 38435 Query 148828 AGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACA 148887 |||| || ||||| || || |||||| || || |||||||| | |||||| | ||||| Sbjct 38436 AGGCAAGGTTGCAAACAGCAACCTCATCGGGAGCACTGTACTCGATGATCTCAGTGCACA 38495 Query 148888 GATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCT 148947 ||| ||| ||||| || | |||||| || ||| ||||| |||| ||||||| Sbjct 38496 AGTTGGAGCACTTGATAGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTGGCAGCGTCCT 38555 Query 148948 TGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGAACCGATGCAGGT 149007 |||| || ||| | || || || || ||||| || | ||| || ||| Sbjct 38556 TGTAGAGGATGAAGGGGTTACCGGTCTCGGTCTGCGACTCGAGGATGG--CGTACCAGAG 38613 Query 149008 C--CTGCGCGCGCACT-TGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCC 149064 | ||| || || ||| ||| ||||||| || |||||| || || | Sbjct 38614 CTTCTGAGCCTTGACGGTGC-GCTTTGAGCGACCTTCGGCCTCGTAACGCTCGTAGAGAC 38672 Query 149065 GCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCG 149124 |||||||| | || |||||||| ||| | ||||||||||||| || ||||||||||||| Sbjct 38673 GCTCGAACTCTTCACCGTAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCACATGAGCG 38732 Query 149125 ACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACA 149184 |||| | |||| | | || | |||||| || |||||||| |||||||| ||||| | Sbjct 38733 ACCAATCACCGTTCTGCTCAACCCTCTTCATGAAGAGATCGGGAACCCAGAGAGCGTAGA 38792 Query 149185 TGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGA 149244 ||| || || || ||||| || ||| ||||| || ||| | | Sbjct 38793 AGAGTTCACGGGCACGAACTTCTTCCTTACCGTGGTTCTTGCGCAAGTCGAGGAACTCAA 38852 Query 149245 ATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTTG---CCGC 149301 | | |||| |||||| ||||||||||| | || | || || |||||| || | Sbjct 38853 AGACATCCGAGTGCCAAGGCTCAATGTAGATGGCAAAGGCACCGGGACGCTTGTTACCAC 38912 Query 149302 CCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCC---AC 149358 |||||||||||| || | ||||||| || || |||| ||| || | || || | Sbjct 38913 CCTGGTCGACGTAACGGGCGGTGTTGTTGAAGACACGAAGCATGGGAACGATACCGTTGC 38972 Query 149359 TGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGA 149418 || || ||||| || | |||| ||| |||| | ||| | ||| | Sbjct 38973 TGACA---CCGTTGGTGCCGGCAATGTAGGAGCCAGTACCTCGAATGCAGTGAATGTTCA 39029 Query 149419 CGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGC 149478 || ||||| ||| || ||| ||||| || ||| ||| || ||| |||| Sbjct 39030 AACCAATGCCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAAATGC 39089 Query 149479 CCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCG 149538 | ||||| ||| ||||||||| | || || || || | | || || | | Sbjct 39090 CGTCGATCGAGTCATCCTTCATGGTAACAAGGAAACAGGACGAGAGCTGTGGGTGGGGAG 39149 Query 149539 TGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGT 149598 | || || ||| | ||| || |||||| ||||| || || || ||| | | || Sbjct 39150 TACCAGCGTTGAAGAGGGTTGGCGAGGCGTGAGTAAAGTACTTTTGCGACATGAGGTTGT 39209 Query 149599 ACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCA 149658 ||| ||||| ||| || ||||| | ||| || || || | || || ||||| |||| Sbjct 39210 ACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGAATACCAACAGCAACACGCATGAGCA 39269 Query 149659 TATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTG 149718 | ||||| || ||||| || || ||| || |||||||||| || || | Sbjct 39270 TGTGCTGGGGACGCTCAGCAACCTTGCCGTTGATGCGGAGCAAGTAGGAACGCTCGAGAG 39329 Query 149719 TCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCG 149752 ||||| |||| ||| | ||||||| |||||||| Sbjct 39330 TCTTGAAGCCGAAGAAGTTGTAGTGGAAGTCGCG 39363 >seq23 Length=140287 Score = 136 bits (150), Expect = 4e-27 Identities = 125/158 (79%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| |||||||| || || ||||||| |||||||| ||||||||||| || |||||| Sbjct 1703 TCCTCAAGCTGCTTTCCGGCAAAAATGAGACGCTGCTGATCGGGAGGGATCCCCTCCTTG 1644 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||| ||||| | |||| ||||||| | ||| || |||| ||||| | Sbjct 1643 TCCTGAATCTTGGCCTTGACGTTGTCAATGGTGTCGGAAGACTCAACCTCGAGGGTGATG 1584 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATGGC 133663 || || ||||||||||| |||||||| ||||||||||| Sbjct 1583 GTCTTACCGGTCAGAGTCTTTACGAAGATCTGCATGGC 1546 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||| ||||||||||| || || | || || ||||||||||| || || ||||||||||| Sbjct 1932 GTCTTCGAGCTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCAGGGGGAATGCCTTCCTT 1873 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||| | | || | ||||| | || ||| || |||| || | Sbjct 1872 GTCCTGGATCTTGGCCTTAACGTTGTCGATAGTGTCCGAGGACTCGACTTCGAGCGTAAT 1813 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| |||||||||| || || |||||||||||||| Sbjct 1812 GGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 1777 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||| ||| ||||| ||||||||||| || || | | | ||||| | ||| || | Sbjct 2430 GGTGCTCTCCTTCTGAATATTGTAATCAGACAGAGTTCGTCCA-TCCTCCAACTGTTTAC 2372 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || | ||||||||||||||||| || ||||||||||| ||||| | Sbjct 2371 CAGCAAAGATCAAACGCTGCTGGTCGGGAGGAATACCTTCCTTGTCCTGAATCTTGGCTT 2312 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | |||| ||||| | | |||||| |||| |||| |||||||| || || | Sbjct 2311 TGACATTGTCAATGGTGTCCGAGCTCTCCACCTCGAGTGTGATCGTTTTGCCAGTAAGCG 2252 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 2251 TCTTGACAAAGATCTGCAT 2233 >seq53 Length=94643 Score = 127 bits (140), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || | ||| | | | || ||||||||||| | Sbjct 56579 GGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCA-TCTTCGAGCTGCTTAC 56637 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | ||||| |||||||| ||||| ||||||||||||||||| ||||| || Sbjct 56638 CAGCGAAGATGAGTCGCTGCTGATCGGGTGGGATGCCTTCCTTGTCCTGAATCTTGGCCT 56697 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||| | || ||| || |||| ||||| ||| |||||||| || | Sbjct 56698 TGACATTGTCGATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGG 56757 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 56758 TCTTGACAAAGATCTGCAT 56776 Score = 111 bits (122), Expect = 2e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || ||||| ||| | || | | | || || |||| Sbjct 56345 ATGCAAGGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCA-TCTTCAAGCT 56403 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || || ||||||||||| ||||| ||||| |||||||| |||| Sbjct 56404 GCTTGCCTGCAAAGATAAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCT 56463 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | || | ||||| | || ||| || |||| || | ||| ||||||| Sbjct 56464 TGGCCTTGACGTTGTCGATAGTGTCCGAGGACTCGACTTCGAGCGTAATGGTCTTGCCGG 56523 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 ||| ||| || || || |||||||| Sbjct 56524 TCAAAGTCTTGACAAAGATCTGCAT 56548 >seq52 Length=95535 Score = 107 bits (118), Expect = 2e-18 Identities = 145/200 (73%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGCTGCTTG 133520 |||||| || ||||| || ||||| || | | | | |||| || ||||||||||| Sbjct 17652 GGTGGATTCCTTCTGGATGTTGTAGTC--CGAGAGGGTACGACCATCTTCGAGCTGCTTA 17709 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| | ||||| |||||||| || || || || ||||||||||| |||||| | Sbjct 17710 CCGGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTGGCC 17769 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | || | ||||| | | ||| || |||| ||||| ||| || || || || Sbjct 17770 TTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTACCCGTGAGG 17829 Query 133641 GTTTTTACGAAAATCTGCAT 133660 ||||| || || |||||||| Sbjct 17830 GTTTTAACAAAGATCTGCAT 17849 >seq100 Length=67640 Score = 102 bits (112), Expect = 8e-17 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| ||||| || ||||| || | ||| ||||||||||||||| || Sbjct 61176 GGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTACC 61117 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| |||||||||||||| ||||| || |||||||| |||||| ||| Sbjct 61116 GGCGAAGATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTT 61057 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 || | || | ||||||| | |||||| || | ||||| ||| || || Sbjct 61056 GACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTACC 61006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483338249855640