Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq23 127 1e-24 >seq23 Length=140287 Score = 127 bits (140), Expect = 1e-24 Identities = 170/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || | || ||| || || | || | |||||||| || || || |||||||| || Sbjct 2460 ACCGCCACGCAGACGCAAAACTAGGTGCAAGGTGCTCTCCTTCTGAATATTGTAATCAGA 2401 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || ||| | || ||||| ||||| || ||||| |||||||||||||| || | || Sbjct 2400 CAGAGTTCGTCCATCCTCCAACTGTTTACCAGCAAAGATCAAACGCTGCTGGTCGGGAGG 2341 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGAT-TCC 33699 | |||||| ||||| ||| || | || |||| ||| | |||||| | | | ||| Sbjct 2340 AATACCTTCCTTGTCCTGAATCTT-GGCTTTGACATTGTCAATGGTGTC-CGAGCTCTCC 2283 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || | ||||||||||| || || | ||| || ||||||||||||||| Sbjct 2282 ACCTCGAGTGTGATCGTTTTGCCAGTAAGCGTCTTGACAAAGATCTGCATA 2232 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || || || ||| ||||| |||||||| || || Sbjct 1776 ACCACCACGGAGACGGAGGACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCGA 1717 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || ||| | || || | || |||||||||||||| | |||||||||||| | || Sbjct 1716 AAGAGTTCGTCCATCCTCAAGCTGCTTTCCGGCAAAAATGAGACGCTGCTGATCGGGAGG 1657 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| ||| || | | || | ||| | ||||||| || || | Sbjct 1656 GATCCCCTCCTTGTCCTGAATCTT-GGCCTTGACGTTGTCAATGGTGTCGGAAGACTCAA 1598 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || ||||| || | || ||||| ||||||||||| Sbjct 1597 CCTCGAGGGTGATGGTCTTACCGGTCAGAGTCTTTACGAAGATCTGCAT 1549 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| ||| || || || | || | ||||| || || || ||||||||||| || Sbjct 2232 ACCACCTCGCAATCGCAAGACAAGGTGCAAGGTGCTTTCCTTCTGAATGTTGTAATCCGA 2173 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| |||| ||||| || || || ||||| || | || |||||||| | || Sbjct 2172 AAGGGTGCGACCGTCTTCCAACTGCTTACCAGCAAAGATGAGTCGTTGCTGATCGGGAGG 2113 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| || || || || || | | |||| ||| | ||||| || || | Sbjct 2112 AATACCCTCCTTATCCTGGATCTT-GGCCTTGACATTGTCGATCGTGTCCGAAGACTCGA 2054 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || ||||| | ||| || |||||||| |||||| Sbjct 2053 CTTCCAAAGTGATGGTCTTTCCTGTGAGCGTCTTGACAAAGATTTGCATA 2004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328649272941120