Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq23 107 5e-18 seq52 87.8 4e-12 >seq23 Length=140287 Score = 107 bits (118), Expect = 5e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| |||||||||||||| || |||||||||||||| || ||| ||| Sbjct 2008 CAAATCTTTGTCAAGACGCTCACAGGAAAGACCATCACTTTGGAAGTCGAGTCTTCGGAC 2067 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || || ||| || || ||| Sbjct 2068 ACGATCGACAATGTCAAGGCCAAGATCCAGGATAAGGAGGGTATTCCTCCCGATCAGCAA 2127 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 |||| ||||| || || |||||||||||||| || | || | | ||||||||| | Sbjct 2128 CGACTCATCTTTGCTGGTAAGCAGTTGGAAGACGGTCGCACCCTTTCGGATTACAACATT 2187 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||| || || | |||||||| ||| || | ||| Sbjct 2188 CAGAAGGAAAGCACCTTGCACCTTGTCTTGCGATTGCGA 2226 Score = 100 bits (110), Expect = 7e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| ||||| || || ||||||||||| | || ||||| || || ||| Sbjct 2236 CAGATCTTTGTCAAGACGCTTACTGGCAAAACGATCACACTCGAGGTGGAGAGCTCGGAC 2295 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || || ||||| |||||||| || || ||||| ||| || ||| || Sbjct 2296 ACCATTGACAATGTCAAAGC-CAAGATTCAGGACAAGGAAGGTATTCCTCCCGACCAGCA 2354 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | ||||| || || || |||||||| |||||| | ||| || | |||||||| | Sbjct 2355 GCGTTTGATCTTTGCTGGTAAACAGTTGGAGGATGGACGAACTCTGTCTGATTACAATAT 2414 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||| || | ||||| |||||| | || || Sbjct 2415 TCAGAAGGAGAGCACCTTGCACCTAGTTTTGCGTCTGCG 2453 >seq52 Length=95535 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| ||||| || || || ||||| | || || || ||| ||| Sbjct 17846 CAGATCTTTGTTAAAACCCTCACGGGTAAGACCATCACCCTCGAGGTCGAGTCTTCGGAC 17787 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || ||||| ||| || || || Sbjct 17786 ACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCAGCAG 17727 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| | |||||||| | || | | || |||||| || Sbjct 17726 CGTCTCATCTTCGCCGGTAAGCAGCTCGAAGATGGTCGTACCCTCTCGGACTACAACATC 17667 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| || || || |||||||| || Sbjct 17666 CAGAAGGAATCCACCCTTCACCTCGT 17641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181613944058781