Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq36 129 6e-25 seq53 93.3 4e-14 seq23 91.5 1e-13 >seq36 Length=116313 Score = 129 bits (142), Expect = 6e-25 Identities = 614/962 (64%), Gaps = 23/962 (2%) Strand=Plus/Plus Query 147460 GCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCG 147519 ||||| || || || ||||| || || ||| |||| | ||||||| | ||| || Sbjct 38429 GCGATGGAGGCAAGGTTGCAAACAGCAACCTCATCGGGAGCACTGTACTCGATGATCTCA 38488 Query 147520 GCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCAC 147579 | ||||| |||| ||| || || || | || | ||| ||| || || ||| Sbjct 38489 GTGCACAAGTTGGAGCACTTGATAGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTGGCA 38548 Query 147580 GCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTA 147639 ||||| ||| |||| ||| | || ||||||||| |||| || | ||| | || Sbjct 38549 GCGTCCTTGTAGAGGATGAAGGGGTTACCGGTCTCGGTCTGCGACTCGAGGATGG-CGTA 38607 Query 147640 TGC-AGGTCCTGCGCTCGCACCCGCTGCCGAT--AGCGGCCCTCGTTTTCGTACCGCTCG 147696 || | ||| || || | ||| | |||| || ||| ||||| |||||| Sbjct 38608 CCAGAGCTTCTGAGCCTTGAC--GGTGCGCTTTGAGCGACCTTCGGCCTCGTAACGCTCG 38665 Query 147697 TACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACAC 147756 || | ||||| ||||| || |||||||| |||||||| ||||| |||| | || ||| Sbjct 38666 TAGAGACGCTCGAACTCTTCACCGTAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCAC 38725 Query 147757 ATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGC 147816 || |||||||| ||| | | ||| | ||| || ||||| || ||||| || Sbjct 38726 ATGAGCGACCAATCACCGTTCTGCTCAACCCTCTTCATGAAGAGATCGGGAACCCAGAGA 38785 Query 147817 GCGTACATAAGATCGCGCGCTTTGCAATCCTCGGCGCCCATG----TTGCGTTTCAAATT 147872 ||||| | || || || || | | | || || || ||||| ||| | Sbjct 38786 GCGTAGAAGAGTTCACGGGCAC-GAACTTCTTCCTTACCGTGGTTCTTGCG---CAAGTC 38841 Query 147873 AAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACG 147932 || | | ||| || | |||||| || |||||||||| ||| | ||||| ||| Sbjct 38842 GAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATGTAGATGGCAAAGGCACCGGGACG 38901 Query 147933 CTTT---CCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTC 147989 ||| || ||||||||||| | || | ||||||| || || || | |||||| | Sbjct 38902 CTTGTTACCACCCTGGTCGACGTAACGGGCGGTGTTGTTGAAGACACGAAGCATGGGAAC 38961 Query 147990 CAGGCCGCTCGCAGTG-CCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGT 148048 | ||| | || | ||||||||| || | | ||| |||| | || Sbjct 38962 GATACCGTT-GCTGACACCGTTGGTGCCGGCAATGTAGGAGCCAGTACCTCGAATGCAGT 39020 Query 148049 GCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCA-ATGTC 148107 | | ||| | |||||||| ||| || ||| || || || ||| | | | | Sbjct 39021 GAATGTTCAAACCAATGCCACCGGCGGTCTTGGAGAT--CATGGCACAGGTCTTGAGGGT 39078 Query 148108 GT-GTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTG 148166 || ||| ||||||||||| ||| | || | | || | ||||| || | | || Sbjct 39079 GTCGTAAATGCCGTCGATCGAGTCATCCTTCATGGTAACAAGGAAACAGGACGAGAGCTG 39138 Query 148167 CGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACT 148226 || | || || || ||| ||||| || ||||| ||||| | ||||| Sbjct 39139 TGGGTGGGGAGTACCAGCGTTGAAGAGGGTTGGCGAGGCGTGAGTAAAGTACTTTTGCGA 39198 Query 148227 CATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGAC 148286 ||| | | |||||||| || ||| |||||||| | ||||||||| || | || || Sbjct 39199 CATGAGGTTGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGAATACCAACAGCAAC 39258 Query 148287 GCGCATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCC 148346 ||||||||||||||||| || || || ||||| | |||||| ||| | || Sbjct 39259 ACGCATGAGCATGTGCTGGGGACGCTCAGCAACCTTGCCGTTGATGCGGAGCAAGTAGGA 39318 Query 148347 ATTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGC 148406 | ||||| || ||| | || ||| | ||||| | || || ||||||| ||| || Sbjct 39319 ACGCTCGAGAGTCTTGAAGCCGAAGAAGTTGTAGTGGAAGTCGCGCTCGTAGATGATAGC 39378 Query 148407 CG 148408 || Sbjct 39379 CG 39380 >seq53 Length=94643 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || ||||||||||||||| | |||||| |||||| ||||| || || | | Sbjct 56355 GACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCTTCAAGCTGCTTGCCTGCA 56414 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || || ||||| ||||| || || || ||| || || | Sbjct 56415 AAGATAAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTGACG 56474 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||| || | | ||| ||||||| ||| | || || || |||| ||| || Sbjct 56475 TTGTCGATAGTGTCCGAGGACTCGACTTCGAGCGTAATGGTCTTGCCGGTCAAAGTCTTG 56534 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 56535 ACAAAGATCTGCAT 56548 >seq23 Length=140287 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | ||||| ||||| ||||||||||| | || || ||| || Sbjct 1757 ACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCGAAAGAGTTCGTCCATCCTCA 1698 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || |||| | | || |||||||| ||||| ||||| || || || || || | Sbjct 1697 AGCTGCTTTCCGGCAAAAATGAGACGCTGCTGATCGGGAGGGATCCCCTCCTTGTCCTGA 1638 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || || | | || | || |||| | ||| || |||| || | || ||| Sbjct 1637 ATCTTGGCCTTGACGTTGTCAATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTA 1578 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || |||||||| |||| ||| ||||||||| Sbjct 1577 CCGGTCAGAGTCTTTACGAAGATCTGCATG 1548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476529812679960