Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq9 134 2e-26 seq1077 89.7 6e-13 >seq9 Length=211508 Score = 134 bits (148), Expect = 2e-26 Identities = 427/663 (64%), Gaps = 38/663 (6%) Strand=Plus/Plus Query 146872 ATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCACG 146931 || ||||| ||||||||||| | || | | | |||||||| || || ||||| ||| Sbjct 209710 ATGTTGAGTTTGGGGAAGGGGAGTGGTTCTCGTTCGAGCTGAATCTTGAGTGGCTCTACG 209769 Query 146932 TGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCG 146991 || | ||||||||| ||||| |||| | | | || | ||| |||| || Sbjct 209770 TGATCTTTGTAGACGTGAGCGTCACCCATAGAGAGAACGAGTTCCTTAGGCTCGCAATCG 209829 Query 146992 GTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCC 147051 || || | || | |||||| ||||||| | |||||| || |||||||||||||| ||| Sbjct 209830 GTGACTTTAGCGATCATGTAAGTGAGCAAAGCGTAGCTAGCAATGTTGAAGGGGACTCCC 209889 Query 147052 AGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCT--------CCC------ 147097 | || | || | || | || |||| ||| || ||||||| ||| Sbjct 209890 AATCCAAGATCGCAGGAACGTTGATACATCTGACATGAGAGCTGCTTTTTACCCTGACCT 209949 Query 147098 ----------CGTCG------GCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGC 147141 ||||| | ||| | || || || | ||||| || || || || Sbjct 209950 TTGGCGTAGGCGTCGAGGTTAGAGACGAAGAATTGACAGAACATGTGACAAGGTGGAAGA 210009 Query 147142 GCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGG 147201 |||||| || || || || ||||| || || || | | ||| |||| | Sbjct 210010 GCCATGAGGGAGAGATCTTTAGGATTCCATGCGCTGAGCAAGATTC---TGCGATCGGTG 210066 Query 147202 ---TTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAG 147258 || |||| |||| ||||| || | || || || ||||| ||||| |||| Sbjct 210067 GGATTGTTCTTGATCTTGTCGATGACATCGCGAAGTTGATCGACGCCTTGGCCAGTGTAG 210126 Query 147259 TTTGTCCCGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGC 147318 | || | ||||| ||| ||| |||||||| | ||| ||||| ||||| ||||| Sbjct 210127 TCGGTGTCACAGTCTTTGTATTCGGCGCCAAAGTGACGCCATTGGAAACCGTAGACTGGA 210186 Query 147319 CCCAGGTCGCCGGGCTTTCTGTGCGAGAAGCC-CGCCCGCTTGAGAAACTCGGGGGACCC 147377 ||||| || || |||||||| || || || | | || ||||| | ||||| Sbjct 210187 CCCAGATCACCTTCTCTTCTGTGCTGCAATCCTCGAGAG-TCAAGGAACTCTCGTGACCC 210245 Query 147378 GTGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCG 147437 || | ||||||||||| ||| || ||| | | |||| ||| ||||| || || Sbjct 210246 GTTGCCGTCCCAGATGTGCACACCTTTGTCTGTGAGCAGCTTGGAGTCGGTCTTTCCAGC 210305 Query 147438 GATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAG 147497 | ||||||||| |||||||| | ||| || | | ||||| | ||| || || ||||| Sbjct 210306 AACGAACCAGAGTAGCTCCTCGAGAACACCGCGGAAGAAGACACGCTTTGTTGTGAGCAG 210365 Query 147498 GGG 147500 || Sbjct 210366 AGG 210368 >seq1077 Length=631 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/224 (70%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 146872 ATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCACG 146931 ||||||||||| |||||||| | |||| || ||| ||| || || || | ||| Sbjct 353 ATCTTGAGCTTAGGGAAGGGAAGCGGGTCTCTCTCCAACTGCGCCTTGAGCGGTTGCACA 412 Query 146932 TGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGC-- 146989 |||| ||| ||||| || || |||| | | | | || || || || || Sbjct 413 TGGTCCTTGTAAACGTGAGCATCACCCATTGCCAGTATGA-GTTCCTTGGGTTC--GCAA 469 Query 146990 -CGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACC 147048 ||||||| | ||| | ||||||||| |||| || ||||| || |||||||| || || Sbjct 470 TCGGTCACTTTGGCGATCATGTAGGTTAGCAACGCATAGCTAGCAATGTTGAAAGGTACA 529 Query 147049 CCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAG 147092 |||| || | ||| | || | |||||||| |||||||||||| Sbjct 530 CCCAACCCAAGGTCGCAGGAACGCTGGTACATCTGGCACGAGAG 573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583388362130400