Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq67 233 3e-55 seq36 136 6e-26 seq323 114 2e-19 seq13 107 3e-17 >seq67 Length=86059 Score = 233 bits (258), Expect = 3e-55 Identities = 396/558 (71%), Gaps = 22/558 (4%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||| ||||| ||||||||||||||||||||| |||||| Sbjct 5193 GATTTGGCAAATGTAC-AAGAAGGCAGAGGCTTCCTTTTGGACCGCCGAGGAGATCGACC 5135 Query 1455835 TCGGCGCCGACACGGTCCA---CTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCA 1455888 | | ||| |||| ||||| ||| | |||| ||||||| || || | Sbjct 5134 TTTCCAAGGACC---TCCATGACTGGGACAACAAGCTCAACGACAACGAGCGTCACTTTA 5078 Query 1455889 TCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC 1455948 || |||||||||||||| || ||| || |||||| ||||| ||||||||| | | Sbjct 5077 TCTCCCACGTCCTCGCCTTCTT-CGCTGCTTCCGATGGTATCGTCAACGAGAACCTCGTC 5019 Query 1455949 GGCCGCTTTATGAAAGAGGTCCAAT-TGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 | || || | || || || |||| ||||| || | || || || |||||||| Sbjct 5018 GAGCGTTTCAGTTCCGAAGTTCAGGCTGCC-GAGGCTCGATGCTTCTATGGTTTCCAGAT 4960 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 | || || ||||| ||||| || || ||||||||||| |||||||||||| | || Sbjct 4959 CATGATGGAGAACATTCACTCCGAGACTTACTCGCTCCTCATCGACACCTACATTCGTGA 4900 Query 1456068 CCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGT-GCCGTCGGTGAGGAAAA 1456126 || | || || ||||||| |||| |||| || | ||||| || | | | | Sbjct 4899 GCCTGAGCAGCGAGAATTCCTCTTTGACGCCGTCGAGACCATCCCCGTC-GTCAAGCAGA 4841 Query 1456127 AGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACA-CTTTGCCGAGCGGC 1456185 ||||||||||||| | ||||||| | || || | || ||| ||||| || | Sbjct 4840 AGGCCGACTGGGCTCTTCGTTGGATCAGC---GACCGCAAAGCCACCTTCGCCGAACGTC 4784 Query 1456186 TCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTT 1456244 |||| | ||||||||| || ||||| ||||| ||||| ||| ||| | ||||||| | Sbjct 4783 TCGTTGCCTTTGCCGCAGTTGAGGGTATCTTCTTCTCCGGCTCCTTCGCCTCCATCTTCT 4724 Query 1456245 GGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGC 1456304 ||||||||||||| || || |||||||| | || ||| |||||| | ||| ||| Sbjct 4723 GGCTCAAGAAGCGTGGTCTTATGCCCGGAC-TCACCTTCTCCAACGAGCTCATCTCACGC 4665 Query 1456305 GACGAA-GTTTTCACCCC 1456321 |||||| || ||||| || Sbjct 4664 GACGAAGGTCTTCACACC 4647 >seq36 Length=116313 Score = 136 bits (150), Expect = 6e-26 Identities = 269/390 (69%), Gaps = 21/390 (5%) Strand=Plus/Minus Query 259796 GAGCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTC 259855 ||||| |||||| | |||||||||||||| || |||| ||| || | ||| || Sbjct 39285 GAGCGTCCCCAGCACATGCTCATGCGTGTTGCTGTTGGT-ATTCACGGCCAG--GACATC 39229 Query 259856 GACAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTGTTCACC 259915 || | || | ||| |||| | |||| ||||||||| ||| || || Sbjct 39228 GAGAGCGCCATCGAG-ACGTACA----ACCT-------CATGTCGCAAAAGTACTTTAC- 39182 Query 259916 TCA-GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTT 259974 ||| || |||| || ||||| || || || || || | ||| ||| ||||| || || Sbjct 39181 TCACGCCTCGCCAACCCTCTTCAACGCTGGTACTCCCCACCCACAGCTCTCGTCCTGTTT 39122 Query 259975 TCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGC 260034 || | |||||||| || |||||||| ||||| || ||||| |||||| || || Sbjct 39121 CCTTGTTACCATGAAGGATGACTCGATCGACGGCATTTACGACACCCTCAAGACCTGTGC 39062 Query 260035 GCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGG 260094 | ||||||||| | ||||| ||||| ||||| | ||| | || | | || Sbjct 39061 CATGATCTCCAAGACCGCCGGTGGCATTGGTTTGAACATTCACTGCATTCGAGGTACTGG 39002 Query 260095 CGCCTACGTGGCGGGCACCAACGGCCAGTC--CAACGGCCTTGTGCCCATGCTTCGCGTT 260152 | ||||| | || ||||||||||| ||| |||||| | || ||||||||||| || Sbjct 39001 CTCCTACATTGCCGGCACCAACGGT--GTCAGCAACGGTATCGTTCCCATGCTTCGTGTC 38944 Query 260153 TTTAACGACACGGCGCGCTACGTCGACCAG 260182 || ||| |||| || || |||||||||||| Sbjct 38943 TTCAACAACACCGCCCGTTACGTCGACCAG 38914 >seq323 Length=11867 Score = 114 bits (126), Expect = 2e-19 Identities = 274/412 (67%), Gaps = 2/412 (0%) Strand=Plus/Minus Query 332926 GTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGT-CGACCGGAGGG 332984 ||||||||| | | || || || || |||| | | |||||||| |||| | || | Sbjct 10852 GTTGCAGGCGAAGCAGAAACGTGTTGTGTTGGAGTAGATCTCCATGGTTCGAC-GAAGAG 10794 Query 332985 CCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCC 333044 |||| || || || || || | | |||||||| ||||| |||| ||||| || | | Sbjct 10793 CCTGCTGCGCTGCTGGTGTCATACTATCGGCCTCATCGAGAATGACAATCTTATGCCTGC 10734 Query 333045 CGTGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCA 333104 | |||| ||| ||| | ||| || || ||||| | || || |||| || | Sbjct 10733 CTGGCGGGAGAGAGACCTTCTTCTGAGCAAAGTTCTTGATCTTGTTTCGGACGATATCGA 10674 Query 333105 CGCCGCGCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAGA 333164 | || |||||||| || ||||||||||||||||| | || | | ||| | || | | Sbjct 10673 CACCTCGCTCGTCGGATGCGTTGAGTTCGAGCACACCTTCCTTGTAGGCATCGCCGAGAA 10614 Query 333165 GGACGCGCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCCGCCAGCA 333224 | | |||||||| || || |||||||| || | || ||| |||||| | | Sbjct 10613 GCGCACGCGCCAGACAGAGGACCGAAGTGGTCTTTCCGATACCCGGCAGACCCGAGATTA 10554 Query 333225 AGAGGTTGGGCATGTTGCCGTCGGCGGCCAGCGCCTTGAGGTAGGCAACGGCGTGCTCGT 333284 ||| | || |||||||||| | | |||| || | ||| || || | || Sbjct 10553 GGAGATGCGGACAGTTGCCGTCGTTCTGAATCACCTTCAGTCGGTCAATGGTGTCTTTGT 10494 Query 333285 TGCCGACAATGTCGTCGAGCACCATTGGGCGGTACTTTTCGATCCATGGGAG 333336 | ||||| | ||| ||||| | ||| || |||||||||| |||||| || Sbjct 10493 TTCCGACCACGTCATCGAGTCGTAATGGTCGATACTTTTCGACCCATGGAAG 10442 >seq13 Length=186657 Score = 107 bits (118), Expect = 3e-17 Identities = 171/244 (70%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| ||| |||||| || ||||||||||| |||||| || | | ||| Sbjct 92208 TACTCCACCTACATCTACCGTGTTCTCAAGCAGGTTCACCCCGACACTGGT-----ATC- 92155 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||||||||| ||||| | || | ||||| || || | ||||| |||| ||||||| | Sbjct 92154 TCCAACAAGGCCATGGCCATTCTTAACTCCTTCGTTCAGGACATCTTCGAGCGCATCGCC 92095 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 || |||||| || || || ||||||| || ||| |||| |||||| Sbjct 92094 ACTGAGGCCTCCAAGCTCGCTTCCTACAACAAGAAGTCGACCATCTCTTCGCGAGAGATC 92035 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 |||||||| || ||||| ||| | | ||| || || ||| ||||||| ||||||| || Sbjct 92034 CAGACCGCTGTCCGCCTCATCCTCCCCGGTGAGCTTTCCAAGCACGCCATCTCCGAAGGT 91975 Query 725139 ACCA 725142 |||| Sbjct 91974 ACCA 91971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176493571441082