Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq53 131 2e-25 seq52 127 2e-24 seq23 125 7e-24 seq100 104 2e-17 seq36 104 2e-17 >seq53 Length=94643 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCT 134576 ||||| ||||| ||||||||||||||| || ||| | || || ||||| |||||| Sbjct 56352 GTGGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCTTCAAGCTGCTTGCCT 56411 Query 134577 GCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTG 134636 ||||| || | ||||||||| || || || ||||| || || || ||||| || ||| Sbjct 56412 GCAAAGATAAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTG 56471 Query 134637 ACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTT 134696 || ||| | ||||| || || || || ||||| |||||||| || ||||| ||||| Sbjct 56472 ACGTTGTCGATAGTGTCCGAGGACTCGACTTCGAGCGTAATGGTCTTGCCGGTCAAAGTC 56531 Query 134697 TTAACGAAAATTTGCAT 134713 || || || || ||||| Sbjct 56532 TTGACAAAGATCTGCAT 56548 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | |||||||| || ||||| ||||| || ||||||||||| Sbjct 56550 CCACCACGGAGGCGGAGAACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAG 56609 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || |||||||| || || || || || | |||||||||||||| || Sbjct 56610 AGGGTGCGGCCATCTTCGAGCTGCTTACCAGCGAAGATGAGTCGCTGCTGATCGGGTGGG 56669 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || ||||| || ||||| ||| | ||||| || || || || Sbjct 56670 ATGCCTTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCAACC 56729 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || ||||| | || || || || || ||||| Sbjct 56730 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 56776 >seq52 Length=95535 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 |||||||| || ||||||||||| || ||||||||||| | ||| || || ||| Sbjct 17641 ACGAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGACCATCTTCG 17700 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| || || || || || | |||||||||||| || || || ||||| || || || Sbjct 17701 AGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGG 17760 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| ||| | ||||| || || || || ||||| || ||||| ||| Sbjct 17761 ATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTA 17820 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || | |||||||| || || ||||| ||| Sbjct 17821 CCCGTGAGGGTTTTAACAAAGATCTGCATCTTG 17853 >seq23 Length=140287 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || | ||| || || || |||||||| ||||||||||| | Sbjct 1775 CCACCACGGAGACGGAGGACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCGAA 1716 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || || ||||| || || |||||||| | ||||||||||||||| || Sbjct 1715 AGAGTTCGTCCATCCTCAAGCTGCTTTCCGGCAAAAATGAGACGCTGCTGATCGGGAGGG 1656 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || ||||| || ||||| ||| | |||||||| || || || Sbjct 1655 ATCCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCAATGGTGTCGGAAGACTCAACC 1596 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| |||||||| | ||| || ||||| || ||||| Sbjct 1595 TCGAGGGTGATGGTCTTACCGGTCAGAGTCTTTACGAAGATCTGCAT 1549 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 ||||| || | ||| |||||| || ||||||||||| | ||| | ||| ||| Sbjct 1985 ACGAGATGCAAGGTGCTTTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGGCCGTCTTCG 1926 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| || || ||||| || | ||||||||| || || || |||||||| || || || Sbjct 1925 AGCTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGG 1866 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || || || ||| | ||||| || || || || ||||| |||||||| || Sbjct 1865 ATCTTGGCCTTAACGTTGTCGATAGTGTCCGAGGACTCGACTTCGAGCGTAATGGTCTTG 1806 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || |||||||| ||||| Sbjct 1805 CCGGTCAAGGTCTTGACGAAAATCTGCAT 1777 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| | |||||| || ||||| | ||| |||||| ||||||||||| || | Sbjct 2231 CCACCTCGCAATCGCAAGACAAGGTGCAAGGTGCTTTCCTTCTGAATGTTGTAATCCGAA 2172 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| || ||| || | ||| || || ||||| || | || ||||||||||| || Sbjct 2171 AGGGTGCGACCGTCTTCCAACTGCTTACCAGCAAAGATGAGTCGTTGCTGATCGGGAGGA 2112 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || || || ||||| ||| | ||||| || || || || Sbjct 2111 ATACCCTCCTTATCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCCGAAGACTCGACT 2052 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||| ||||| || || || | || || || || |||||||| Sbjct 2051 TCCAAAGTGATGGTCTTTCCTGTGAGCGTCTTGACAAAGATTTGCAT 2005 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || ||||| || ||||| | ||| ||||| ||||| ||||| || | || | Sbjct 2450 AGACGCAAAACTAGGTGCAAGGTGCTCTCCTTCTGAATATTGTAATCAGACAGAGTTCGT 2391 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | |||||| || ||||| |||||||||||||| ||||| || || ||||| Sbjct 2390 CCATCCTCCAACTGTTTACCAGCAAAGATCAAACGCTGCTGGTCGGGAGGAATACCTTCC 2331 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || |||||| ||| | ||||| || ||||| ||||| || Sbjct 2330 TTGTCCTGAATCTTGGCTTTGACATTGTCAATGGTGTCCGAGCTCTCCACCTCGAGTGTG 2271 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| || || | || || || || || ||||| Sbjct 2270 ATCGTTTTGCCAGTAAGCGTCTTGACAAAGATCTGCAT 2233 >seq100 Length=67640 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | |||||||| || || || ||||| || ||||||||||| Sbjct 61205 CCACCACGGAGACGGAGGACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAG 61146 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| |||||||| || || || || || | ||||||||| ||||| || Sbjct 61145 AGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCGGGGGGG 61086 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || || || ||||| ||| | |||||||| || ||||| Sbjct 61085 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 61026 Query 134667 TCGAGAGTAATGGTTTTACC 134686 || || || ||||| ||||| Sbjct 61025 TCAAGGGTGATGGTCTTACC 61006 >seq36 Length=116313 Score = 104 bits (114), Expect = 2e-17 Identities = 533/844 (63%), Gaps = 7/844 (1%) Strand=Plus/Minus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 || |||||||| |||| || || || || ||||||||| | ||||| || |||| | Sbjct 39276 CAGCACATGCTCATGCGTGTTGCTGTTGGTATTCACGGCCAGGACATCGAGAGCGCCATC 39217 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 || |||||| | | ||||| || | ||||| ||||| ||||| ||| | || | Sbjct 39216 GAGACGTACAACCTCATGTCGCAAAAGTACTTTACTCACGCCTCGCCAACCCTCTTCAAC 39157 Query 7684 GCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGC 7743 || || || | || || | || || ||||| | | |||||| || ||| Sbjct 39156 GCTGGTACTCCCCACCCACAGCTCTCGTCCTGTTTCCTTGTTACCATGAAGGATGACTCG 39097 Query 7744 ATCGACGGCATTTACAACACGCTGCGCGA-TTGCGCCAATATTTCCAAATACGGCGGCGG 7802 ||||||||||||||| |||| || | || || |||| || ||||| || ||| || Sbjct 39096 ATCGACGGCATTTACGACACCCT-CAAGACCTGTGCCATGATCTCCAAGACCGCCGGTGG 39038 Query 7803 AATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGG 7862 || ||| ||||| | || | | || | | || | ||| | ||||||||| Sbjct 39037 CATTGGTTTGAACATTCACTGCATTCGAGGTACTGGCTCCTACATTGCCGGCACCAACGG 38978 Query 7863 AAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGA 7922 || |||| | | |||||| | || || ||||| ||| | | || | || || Sbjct 38977 TGTCAGCAACGGTATCGTTCCCATGCTTCGTGTCTTCAACAACACCGCCCGTTACGTCGA 38918 Query 7923 CCAGGGGGG---AAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGA 7979 |||||| || ||||| || ||| ||||||||| | ||||| |||||| |||| Sbjct 38917 CCAGGGTGGTAACAAGCGTCCCGGTGCCTTTGCCATCTACATTGAGCCTTGGCACTCGGA 38858 Query 7980 CATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCGCGCGA 8039 | | | | || | |||| ||| ||| ||||| || || || Sbjct 38857 TGTCTTTGAGTTCCTCGACTTGCGCAAGAACCACGGTAAGGAAGAAGTTCGTGCCCGTGA 38798 Query 8040 TCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCACA 8099 || |||| || | ||||| |||||||| || |||| | | ||| | ||| | Sbjct 38797 ACTCTTCTACGCTCTCTGGGTTCCCGATCTCTTCATGAAGAGGGTTGAGCAGAACGGTGA 38738 Query 8100 ATGGTCGCTCATGTGCCCCGATCGTTGCCCTTTATTAAAAAACGTTTACGGTTCAAAATT 8159 |||||||||||||||||| | ||||| | || |||||| | | || Sbjct 38737 TTGGTCGCTCATGTGCCCCAACGAGTGCCCCGGTCTTGCCGACTGCTACGGTGAAGAGTT 38678 Query 8160 TGAACAATTGTACAAACAATACGAACACGACGG-CGCGTACGTGCGGCAAGTGAAAGCGC 8218 || | | ||| | | ||||| ||| || ||| | ||| || || || | Sbjct 38677 CGAGCGTCTCTACGAGCGTTACGAGGCCGAAGGTCGC-TCAAAGCGCACCGTCAAGGCTC 38619 Query 8219 GCGACCTGCACCGCGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGT 8278 | || |||||| |||| | || | ||| ||||||| || | ||| || | Sbjct 38618 AGAAGCTCTGGTACGCCATCCTCGAGTCGCAGACCGAGACCGGTAACCCCTTCATCCTCT 38559 Query 8279 ACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCA 8338 |||| |||||| |||| ||| ||| || | ||| | || || || ||| || Sbjct 38558 ACAAGGACGCTGCCAACCGCAAGTCCAACCAGAAGAACCTCGGTACTATCAAGTGCTCCA 38499 Query 8339 ATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAG 8398 | ||||| |||| || | ||||||| || ||||| || || || |||||||| || | Sbjct 38498 ACTTGTGCACTGAGATCATCGAGTACAGTGCTCCCGATGAGGTTGCTGTTTGCAACCTTG 38439 Query 8399 CGTC 8402 | || Sbjct 38438 CCTC 38435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505312096905720