Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq36 214 2e-50 seq113 116 5e-21 seq67 102 1e-16 >seq36 Length=116313 Score = 214 bits (236), Expect = 2e-50 Identities = 891/1391 (64%), Gaps = 25/1391 (2%) Strand=Plus/Plus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||||||||| | ||||| || || |||||||| || ||||||||| || ||||| Sbjct 37900 GTAGATGTTGGAGGTGTAGGGCTCGAAGCATTCGTTGAAACCCAAGATCTGACTTGTGGA 37959 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 || || ||||| || || | ||| || ||| |||||||| | || ||| | Sbjct 37960 TGCGGTAGGCATGGGAGCGAGCAAGAGCGAGTTGCGAAGACCGTGCTTGGCGATCTTGGC 38019 Query 110827 CTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGA 110884 |||||| | ||||||| | | | | || | | | |||||||||| |||| Sbjct 38020 CTTGAGCGAAGCCCAGTCCCAAAGATCGGAAGGGGT--AACACCCCACATGTCGTACTGG 38077 Query 110885 AGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCC 110944 || | || ||||| || || ||||| | |||| || |||| || || | | ||| Sbjct 38078 AGTTCACCCTGGGAGGCAGGGGAACCGGCGTAGGTCTCGTAGGTGCCATGCTCCTGGGCC 38137 Query 110945 AATTCACA-GCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 111003 || || || | |||| || || | ||||| || ||||| || ||||| | | |||| Sbjct 38138 AACTCGCACGATCGC-TCGAGAGCGGCGTGGTAGATGGTCTCGAAGATCTGGACGTTCAA 38196 Query 111004 CTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACC 111063 || || || ||||| ||||| | | || || |||| |||||||| Sbjct 38197 GCGACGAGCCTCGGGCGACTCAAAGGCGTAACCCATGATCATGAAGGCATCGGCGAGACC 38256 Query 111064 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGG 111123 || ||||| | |||||| || | ||| ||||| ||||| || || |||||| || Sbjct 38257 CTGGACACCGATACCAATGGGGCGGTGACGCATGTTAGAACGACGAGCCTCCTCAACAGG 38316 Query 111124 ATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATG 111183 || | || | || |||| | ||| | || ||| | | ||| | | || || Sbjct 38317 GTAGTAGTTGATATCGATGATTTTGTTCAAGTTCTTGCAGATAGCCTTGGCAACCTCGTG 38376 Query 111184 -AAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTG 111242 || || | | || | || | | || | | ||||| ||||| | Sbjct 38377 CAAACGCTTGA-AGTCGTAGACCTTGGTAACGGGGTCGATGAAGGTGGGAAGAGCGATGG 38435 Query 111243 ATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATA 111302 | || | ||||||||||| |||||| | | ||||||| | || || || || | Sbjct 38436 AGGCAAGGTTGCAAACAGCAACCTCATCGGGAGCACTGTACTCGATGATCTCAGTGCACA 38495 Query 111303 AGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCT 111362 ||||||| | ||| || || || | ||||| ||||| ||| |||| || |||| Sbjct 38496 AGTTGGAGCACTTGATAGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTGGCAGCGTCCT 38555 Query 111363 TGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACA 111421 ||||||| ||| |||| | || ||||| ||||| || | ||| || || | ||| | | Sbjct 38556 TGTAGAGGATGAAGGGGTTACCGGTCTCGGTCTGCGACTCGAGGATGGCGTACCAGAGCT 38615 Query 111422 TCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCT 111481 || | | || | || || || | || || || |||||||| |||||| Sbjct 38616 TCTGAGCCTTG-ACGGTGCGCTTTGAGCGACCTTCGGCCTCGTAACGCTCGTAGAGACGC 38674 Query 111482 TCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGAC 111541 || ||||| ||||| ||||| ||||| || || || || || | || ||| Sbjct 38675 TCGAACTCTTCACCGTAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCACATGAGCGAC 38734 Query 111542 CATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAG 111601 || | ||| | |||||||| ||||||||| || || |||| ||| || | | ||| Sbjct 38735 CAATCACCGTTCTGCTCAACCCTCTTCATGAAGAGATCGGGAACCCAGAGAGCGTAGAAG 38794 Query 111602 AGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATG 111661 || || | ||| | ||||| | ||| ||||| || || || |||||||| | | Sbjct 38795 AGTTCACGGGCACGAACTTCTTCCTTACCGTGGTTCTTGCGCAAGTCGAGGAACTCAAAG 38854 Query 111662 ATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCA 111715 | ||||| |||||| ||||||| |||| || | | || ||||| ||| Sbjct 38855 ACATCCGAGTGCCAAGGCTCAATGTAGATGGCAAAGGCACC---GGGACGCTTGTTACCA 38911 Query 111716 GCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCAT-- 111773 | || | || || || || ||| ||| || || |||||||| |||| ||||| | Sbjct 38912 CCCTGGTCGACGTAACGGGCGGTGTTGTTGAAGACACGAAGCATGGGAACGATACCGTTG 38971 Query 111774 CTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCA 111833 |||| ||| || || || ||| || | | ||| | || |||| || Sbjct 38972 CTGA--CACCGTTGGTGCCGGCAATGTAGGAGCCAGTACCTCGAATGCAGTGAATGTTCA 39029 Query 111834 TCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATAC 111893 ||||| || || || ||| ||||| ||||| | | || || | || || | Sbjct 39030 AACCAATGCCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAAATGC 39089 Query 111894 CGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTG 111953 ||| ||| ||||| ||||| ||| | |||||| || || | ||| || || | Sbjct 39090 CGTCGATCGAGTCATCCTTCATGGTAACAAGGAAACAGGACGAGAGCTGTGGGTGGGGAG 39149 Query 111954 TACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC-CTTGGGACATCTTGTCG 112012 ||||||| |||||||||||||| | |||||| | || ||| ||| ||||| || | Sbjct 39150 TACCAGCGTTGAAGAGGGTTGGCGAGGCGTGAGT-AAAGTACTTTTGCGACATGAGGTTG 39208 Query 112013 TATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAAC 112072 || ||||| | | | || ||||| | ||||| || || | || || ||||||| | Sbjct 39209 TACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGAATACCAACAGCAACACGCATGAGC 39268 Query 112073 ATGTACTGTGG 112083 |||| ||| || Sbjct 39269 ATGTGCTGGGG 39279 >seq113 Length=59678 Score = 116 bits (128), Expect = 5e-21 Identities = 277/411 (67%), Gaps = 16/411 (4%) Strand=Plus/Plus Query 182491 AGAAGTAGTGGATCATATTTAGGATGAGACCCTTGATGTGAGAACCATCATTATCGGCAT 182550 |||||| || || | || | ||||||||||||||| || |||||||| | ||| || Sbjct 56803 AGAAGTGGTCGAGGAAGTTGATGATGAGACCCTTGATATGTGAACCATCGTGATCCTGAT 56862 Query 182551 CTGTCATAATCATAAGACGACCATAGCG-AAGTTCAGAAACATCTTGGTAGTCTTTTCCT 182609 | ||||| ||||| | || || || || ||| | | ||| || | || | || || Sbjct 56863 CGGTCATGATCATGATACTGCCGTATCGCAAGCT-ACTAACGTCAAGATATTGCTTGCCG 56921 Query 182610 TGTTGAAGACCAAGGATCTTCTTGAGATCATTGAACTCCTGGTT--TGATGTAAGCTGTG 182667 ||||||||||| || || | |||| | |||| || ||| | ||| | ||| Sbjct 56922 TGTTGAAGACCGAGAATTTCTTTGATGGCTTTGATTTCTGCGTTCTTCATG--ATCTGGT 56979 Query 182668 CCACCGAAGCGTCCCGAACATTCTTACATTTACCGCGAAGTGGGAACACACCGTAGTGAT 182727 | | || || ||||| || | ||||| || || || || |||||||||| | Sbjct 56980 CGTGAGTGGCCTCACGAACGTTGAGAAGCTTACCACGGAGCGGAAAGACACCGTAGTTGT 57039 Query 182728 CACGACCAACGACAGAGAGACCCGCAACCGCGAGGGTTTTCGCCGAATCACCCTCCGTGA 182787 ||||||| || || || || ||||| ||||| | || || || ||||| || |||| Sbjct 57040 CACGACCCACTTCAACAAGGCCGGCAACAGCGAGAGCCTTGGCGGAGTCACCTTCGGTGA 57099 Query 182788 CAATGAGAGTACACTTTCCAGATTG--TGCCGTACCCGCCTTGTTCGCGTCATCCAACTT 182845 |||||| ||||| | || || |||| ||| || ||||| || || || | ||| Sbjct 57100 GAATGAGTGTACAGTCCTTAGCTTTCCTGCC--ACCTGCATTGTTGGCATCTTCGAGCTT 57157 Query 182846 GGGAATACCGGTAATTTTGGA---CTTGCGAGCACCATCGGTCTTCTTGAG 182893 ||| || ||| || ||| |||| || || |||||||||||||| Sbjct 57158 GGGGATGTTGGTGATCCTGGTACGCTTGTGA---CCGTCGGTCTTCTTGAG 57205 >seq67 Length=86059 Score = 102 bits (112), Expect = 1e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| ||||| || || || || || || || || |||||| || || ||||| ||||| Sbjct 4650 GTGAAGACCTTCGTCGCGTGAGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATAAGACC 4709 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || | | ||| || |||||||||||||||||||| || Sbjct 4710 ACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGATACCCTCAACTGC 4769 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGG 122818 ||||| |||| || ||||||||||||| Sbjct 4770 GGCAAAGGCAACGAGACGTTCGGCGAAGG 4798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627924755685600