Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq36 242 5e-59 seq113 149 8e-31 seq67 102 1e-16 >seq36 Length=116313 Score = 242 bits (268), Expect = 5e-59 Identities = 1120/1747 (64%), Gaps = 49/1747 (3%) Strand=Plus/Plus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 ||||||||||| | || |||||||| |||| |||||| | || | ||||| || | | Sbjct 37556 CGGAGGTAGTAGGTACCGGTCTTGAGACCCTTCTTCCAACCGTAGAAGTGCATCGAAGTC 37615 Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956 |||| || || ||| || | || ||| | ||| || || ||||| Sbjct 37616 AACTGACCGAAGGAAGGAGCCGACAAGTGGATGTTGAGGGATTGAGACTGGCAAATGAAA 37675 Query 117957 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTG 118016 || ||||| || ||||| || || | | ||||| ||| ||||| |||||| || Sbjct 37676 GCACCTCGATCAGCGGCCATGTCGATGATAGCCTTCTGGGAGATCTCCCAAACAGTCTTG 37735 Query 118017 TAGAGGTTCTTAATATCATCTGGGATATCCACGATATTT-TGGATGGATCCACCCGCCTT 118075 ||||| ||||| ||| || || ||| ||| || || |||||||| ||||| Sbjct 37736 TAGAGCTTCTTGATACGGTCAGGAATA-CCAGGAACGTTCTGGATGGAACCACCGTGAGC 37794 Query 118076 GACCATGAGATCCTTCATA---TCCTTTGACCAGAGACCAATCTTT--TTGAGATCCTCC 118130 || || | | |||||| || || ||| ||||| || | || || Sbjct 37795 GATAATACGGTTCTTCATGGTGTCGTT---CCA-----CAATCCTTGCTCGACGAGTTCG 37846 Query 118131 ACGAGATGCTTA---TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGA-TAGAT 118186 ||| | | ||||| || || ||||| || ||| || | ||| ||||| Sbjct 37847 CGGAGCAACCAAGGGTTGACGACCTGGAATTCACCAGCAAGGACACGACG-AGAGTAGAT 37905 Query 118187 ATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGT 118246 |||| ||||| ||||| ||||| || ||| ||||||||| || |||||| || || Sbjct 37906 GTTGGAGGTGTAGGGCTCGAAGCATTCGTTGAAACCCAAGATCTGACTTGTGGATGCGGT 37965 Query 118247 GGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACC---CTTTTCCCTAATGCGTTCCTT 118303 |||||||| || | | || ||| || ||||| ||| | | || |||| Sbjct 37966 AGGCATGGGAGCGAGCAAGAGCGAGTTGCGAAGACCGTGCTTGGCGATCTTGG---CCTT 38022 Query 118304 GAGAGCGTCCCAGTCGTA--GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGG 118361 ||| | ||||||| | | | | | | || |||||| || ||||||| Sbjct 38023 GAGCGAAGCCCAGTCCCAAAGATCGGAAGGGGTAACACC--CCACATGTCGTACTGGAGT 38080 Query 118362 ATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAAT 118421 ||| ||||| || || || || | | ||||| || | ||| | ||| ||||| Sbjct 38081 TCACCCTGGGAGGCAGGGGAACCGGCGTAGGTCTCGTAGGTGCCATGCTCCTGGGCCAAC 38140 Query 118422 TCGGA-GCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGC 118480 ||| | | |||| ||||| || ||||| || || || || || || | | |||| || Sbjct 38141 TCGCACGATCGC-TCGAGAGCGGCGTGGTAGATGGTCTCGAAGATCTGGACGTTCAA-GC 38198 Query 118481 CTTG-GCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTT 118539 | |||||| || ||||| ||| | | || || |||| |||||||| | Sbjct 38199 GACGAGCCTCGGGCGACTCAAAGGCGTAACCCATGATCATGAAGGCATCGGCGAGACCCT 38258 Query 118540 GGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGAT 118599 ||||||||| ||||| ||||| || | ||| ||||| ||||| ||| || || | Sbjct 38259 GGACACCGATACCAATGGGGCGGTGACGCATGTTAGAACGACGAGCCTCCTCAACAGGGT 38318 Query 118600 AAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATG-A 118658 | | || ||||||| | | || | || ||| || | |||| | | || || | Sbjct 38319 AGTAGTTGATATCGATGATTTTGTTCAAGTTCTTGCAGATAGCCTTGGCAACCTCGTGCA 38378 Query 118659 AGCTTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGA 118717 | | || | | || | || | || | | || | | ||||| ||||| || Sbjct 38379 AACGCTT-GAAGTCGTAGACCTTG-GTAACGGGGTCGATGAAGGTGGGAAGAGCGATGGA 38436 Query 118718 CGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAA 118777 || || || || |||| |||||| | || ||||||| || || || |||||||| Sbjct 38437 GGCAAGGTTGCAAACAGCAACCTCATCGGGAGCACTGTACTCGATGATCTCAGTGCACAA 38496 Query 118778 GTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTT 118837 ||| || | ||| || || || | |||||| || || ||||| ||| || ||||| Sbjct 38497 GTTGGAGCACTTGATAGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTGGCAGCGTCCTT 38556 Query 118838 GTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CAT 118896 ||| || ||| | || | || ||||| || || |||| ||| || || | ||||| | | Sbjct 38557 GTAGAGGATGAAGGGGTTACCGGTCTCGGTCTGCGACTCGAGGATGGCGTACCAGAGCTT 38616 Query 118897 CGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTT 118956 | | ||| || ||| || | || || || ||||||| |||||| | Sbjct 38617 CTG-AGCCTTGACGGTGCGCTTTGAGCGACCTTCGGCCTCGTAACGCTCGTAGAGACGCT 38675 Query 118957 CAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACC 119016 | ||||||||||| | || | || || || || | ||||| | ||| |||| Sbjct 38676 CGAACTCTTCACCGTAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCACATGAGCGACC 38735 Query 119017 ATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGA 119076 | | ||| || |||||||| |||||||||||| || || | |||||| || |||||| Sbjct 38736 AATCACCGTTCTGCTCAACCCTCTTCATGAAGAGATCGGGAACCCAGAGAGCGTAGAAGA 38795 Query 119077 GATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGA 119136 | || || ||| ||||||| | || || || ||||| || | || || | || Sbjct 38796 GTTCACGGGCACGAACTTCTTCCTTACCGTGGTTCTTGCGCAAGTCGAGGAACTCAAAGA 38855 Query 119137 TATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCT 119193 ||||| |||||| || || | ||| | || | | || ||| |||| ||| Sbjct 38856 CATCCGAGTGCCAAGGCTCAATGTAGATGGCAAAGGCACCGGGACGCTTGTTACCACCCT 38915 Query 119194 GGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATT 119253 ||| || || | || ||| ||| || ||||||||||| |||| |||||| | | Sbjct 38916 GGTCGACGTAACGGGCGGTGTTGTTGAAGACACGAAGCATGGGAACGATACCGTTGCTGA 38975 Query 119254 GGCCATTTGTCCCCCGAA--TACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACC 119311 || || || || || || ||| | | | ||| | ||| |||| || ||| Sbjct 38976 CACCGTTGGTGCCGGCAATGTAGGAGCC--AGTACCTCGAATGCAGTGAATGTTCAAACC 39033 Query 119312 AATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATC 119371 ||| || || || ||| ||||| || || | |||| || |||| || || || Sbjct 39034 AATGCCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAAATGCCGTC 39093 Query 119372 GATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACC 119431 |||||||||| |||| | | | ||||| ||| ||| | || || ||| ||||| Sbjct 39094 GATCGAGTCATCCTTCATGGTAACAAGGAAACAGGACGAGAGCTGTGGGTGGGGAGTACC 39153 Query 119432 AGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATAC-CTTGGGACATCTTGTCGTAGG 119490 |||||||||||| ||||| | |||| || || ||| ||| ||||| || ||| | Sbjct 39154 AGCGTTGAAGAGGGTTGGCGAGGCGT-GAGTAAAGTACTTTTGCGACATGAGGTTGTACG 39212 Query 119491 TCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGT 119550 |||| | | || ||||| | ||||||||||| | | || ||||| | ||||| Sbjct 39213 TCTCGATGGCGCTCTCGATGTCCTGGCCGTGAATACCAACAGCAACACGCATGAGCATGT 39272 Query 119551 ATTGGGG 119557 ||||| Sbjct 39273 GCTGGGG 39279 >seq113 Length=59678 Score = 149 bits (164), Expect = 8e-31 Identities = 269/385 (70%), Gaps = 14/385 (4%) Strand=Plus/Plus Query 179733 CTTGAGGAGCGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGA 179792 |||||| |||||||| |||||| || || | |||| |||||||||||| || ||||| Sbjct 56786 CTTGAGCAGCGATGGGTAGAAGTGGTCGAGGAAGTTGATGATGAGACCCTTGATATGTGA 56845 Query 179793 ACCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCG-AAGCTCGGAAACAT 179851 |||||||| |||| ||| ||||| ||||| | | || || || ||||| ||| | Sbjct 56846 ACCATCGTGATCCTGATCGGTCATGATCATGATACTGCCGTATCGCAAGCT-ACTAACGT 56904 Query 179852 CTTGATAATCCTTACCTTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGT 179911 | |||| | ||| || ||||||||||| | || | |||| | |||| ||| || Sbjct 56905 CAAGATATTGCTTGCCGTGTTGAAGACCGAGAATTTCTTTGATGGCTTTGATTTCTGCGT 56964 Query 179912 T-----TGATGTGAGTTGCGCCACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAG 179966 | |||| || || || | || || || || || || | ||| |||||||| Sbjct 56965 TCTTCATGATCTG-GT--CGTGAGTG--GCCTCACGAACGTTGAGAAGCTTACCACGGAG 57019 Query 179967 AGGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTT 180026 || || |||||||||| |||||||| || || || || ||||| ||||| | ||| Sbjct 57020 CGGAAAGACACCGTAGTTGTCACGACCCACTTCAACAAGGCCGGCAACAGCGAGAGCCTT 57079 Query 180027 CGCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTC-CCTGCCT 180085 ||||| ||||| || || | ||||| ||||| | || || | | | | ||||| | Sbjct 57080 GGCGGAGTCACCTTCGGTGAGAATGAGTGTACAGTCCTTAGCTT-TCCTGCCACCTGCAT 57138 Query 180086 TGTTCGCGTCGTCCAACTTGGGAAT 180110 |||| || || || | |||||| || Sbjct 57139 TGTTGGCATCTTCGAGCTTGGGGAT 57163 >seq67 Length=86059 Score = 102 bits (112), Expect = 1e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| ||||| ||||| || |||||||| || || |||||| || || ||||| ||||| Sbjct 4650 GTGAAGACCTTCGTCGCGTGAGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATAAGACC 4709 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||| | |||||| || | || ||||| ||||||||||| ||||| || Sbjct 4710 ACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGATACCCTCAACTGC 4769 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGG 130175 || || |||| |||||| || || |||| Sbjct 4770 GGCAAAGGCAACGAGACGTTCGGCGAAGG 4798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618329594459160