Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq36 313 3e-80 seq113 147 3e-30 seq67 125 8e-24 >seq36 Length=116313 Score = 313 bits (346), Expect = 3e-80 Identities = 1133/1748 (65%), Gaps = 51/1748 (3%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||||| || || | |||||||| || | ||||| || | | Sbjct 39279 CCCCAGCACATGCTCATGCGTGTTGCTGTTGGTATTCACGGCCAGGACATCGAGAGCGCC 39220 Query 104282 TTGGAGACATACGACAAGATGTCCCAAG-GTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||| || ||||| ||| ||| || | |||||| | ||||||||||| Sbjct 39219 ATCGAGACGTACAACCTCATGTCGCAAAAGTACTTT-ACTCACGCCTCGCCAACCCTCTT 39161 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| |||||||| || || || | || || |||||| | ||| ||||| || Sbjct 39160 CAACGCTGGTACTCCCCACCCACAGCTCTCGTCCTGTTTCCTTGTTACCATGAAGGATGA 39101 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 ||| ||| |||| || || | || || | | ||||| ||||| ||| || || Sbjct 39100 CTCGATCGACGGCATTTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGACCGCCGG 39041 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 104520 || ||||| || |||| || | ||| | | || ||| || || || Sbjct 39040 TGGCATTGGTTTGAACATTCACTGCATTCGAGGTACTGGCTCCTACATTGCCGGCACCAA 38981 Query 104521 TGGTCAATCAG--ATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 ||| |||| | ||||| |||| |||||||| || || ||| ||| || || || Sbjct 38980 CGGTG--TCAGCAACGGTATCGTTCCCATGCTTCGTGTCTTCAACAACACCGCCCGTTAC 38923 Query 104579 GTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 104632 || | || | ||| ||||| || | | || |||| ||||||| ||| Sbjct 38922 GTCGACCAGGGTGGTAACAAGCGTCCC---GGTGCCTTTGCCATCTACATTGAGCCTTGG 38866 Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGG 104692 ||| ||||| || | |||||||| || ||||| ||||| ||| | || || | || Sbjct 38865 CACTCGGATGTCTTTGAGTTCCTCGACTTGCGCAAGAACCACGGTAAGGAAGAAGTTCGT 38806 Query 104693 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752 ||| || ||||||| |||||||||| |||| ||||||||||||||||| |||||| || Sbjct 38805 GCCCGTGAACTCTTCTACGCTCTCTGGGTTCCCGATCTCTTCATGAAGAGGGTTGAGCAG 38746 Query 104753 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGT 104812 | || ||||||| ||| | || || || || || ||||| |||| | ||| Sbjct 38745 AACGGTGATTGGTCGCTCATGTGCCCCAACGAGTGCCCCGGTCTTGCCGACTGCTACGGT 38686 Query 104813 GAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCG-ACGGT 104871 || ||||| || || ||| ||||||| |||||||| | | ||| || || Sbjct 38685 GAAGAGTTCGAGCGTCTCTACGAGCGTTACGAGGCCGAAGGTCGCTC-AAAGCGCACCGT 38627 Query 104872 GCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCAT 104930 | || | || | | ||| | || || ||| |||| || |||||||| |||| || | Sbjct 38626 -CAAGGCTCAGAAGCTCTGGTACGCCATCCTCGAGTCGCAGACCGAGACCGGTAACCCCT 38568 Query 104931 ACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCA 104990 ||| || ||||| ||||| |||| ||| || || ||||| | ||| |||| Sbjct 38567 TCATCCTCTACAAGGACGCTGCCAACCGCAAGTCCAACCAGAAGAACCTCGGTACTATCA 38508 Query 104991 AGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGT 105050 || | ||||| | || || || ||| | || | | | |||||| ||||| | Sbjct 38507 AGTGCTCCAACTTGTGCACTGAGATCATCGAGTACAGTGCTCCCGATGAGGTTGCTGTTT 38448 Query 105051 GTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATT 105110 | ||||| || || |||||||| |||| | | || || | || ||| | || | Sbjct 38447 GCAACCTTGCCTCCATCGCTCTTCCCACCTTCATCGACCCCGTTACCAAGGTCTACGACT 38388 Query 105111 ATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATA 105170 | | ||||| ||| | || || || ||| ||| | |||| | | || |||| Sbjct 38387 TCAAGCGTTTGCACGAGGTTGCCAAGGCTATCTGCAAGAACTTGAACAAAATCATCGATA 38328 Query 105171 GAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTC 105230 || | ||||| |||||| |||||| ||||| ||| | ||||| || |||||| Sbjct 38327 TCAACTACTACCCTGTTGAGGAGGCTCGTCGTTCTAACATGCGTCACCGCCCCATTGGTA 38268 Query 105231 TCGGTGTTCAGGGTCTCGCGGATGTATTCAT--TCTTTGTCGCCACGCATTTGATTCCGA 105288 ||||||| ||||||||||| |||| ||||| || | | | |||| ||||| || Sbjct 38267 TCGGTGTCCAGGGTCTCGCCGATGCCTTCATGATCATGG--GTTACGCCTTTGAGTCGCC 38210 Query 105289 CGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGC 105348 ||| || | || | | || || |||||||| || ||||||||||| || || Sbjct 38209 CGAGGCTCGTCGCTTGAACGTCCAGATCTTCGAGACCATCTACCACGCCGCTCTCGA-GC 38151 Query 105349 GA--GTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCT 105406 || || | |||||||| ||| |||| | || || |||| | ||||| || || Sbjct 38150 GATCGTGC-GAGTTGGCCCAGGAGCATGGCACCTACGAGACCTACGCCGGTTCCCCTGCC 38092 Query 105407 TCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT-----TCACTACG 105461 || || || | || || | || |||||| |||| ||| || || | | Sbjct 38091 TCCCAGGGTGAACTCCAGTACGACATGTGG---GGTGTTACC--CCTTCCGATCTTTGGG 38037 Query 105462 ACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGG 105521 |||||| | ||||||| ||| || | |||||||| ||| ||| | | | Sbjct 38036 ACTGGGCTTCGCTCAAGGCCAAGATCGCCAAGCACGGTCTTCGCAACTCGCTCTTGCTCG 37977 Query 105522 CTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 105581 |||| ||||| || || ||||| || ||||||||| || |||||||| || |||| Sbjct 37976 CTCCCATGCCTACCGCATCCACAAGTCAGATCTTGGGTTTCAACGAATGCTTCGAGCCCT 37917 Query 105582 ACACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAG 105640 |||| | |||||||| ||| | | ||| || || || || | | |||||| Sbjct 37916 ACACCTCCAACATCTACTCT-CGTCGTGTCCTTGCTGGTGAATTCCAGGTCGTCAAC--- 37861 Query 105641 CATCTCGTGGAT----GACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCT 105696 | | | || | | || ||| ||| || | ||| | | |||||| | | Sbjct 37860 CCT-TGGTTGCTCCGCGAACTCGTCGAGCAAGGATTGTGGAACGACACCATGAAGAACCG 37802 Query 105697 CATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAA 105756 || | ||||||||||| || || || | |||||| | || ||||| Sbjct 37801 TATTATCGCTCACGGTGGTTCCATCCAGAACGTTCCTGGTATTCCTGACCGTATCAAGAA 37742 Query 105757 GTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCG 105816 | | ||| || |||||||| ||| ||||| | |||| ||||||||||| ||||| Sbjct 37741 GCTCTACAAGACTGTTTGGGAGATCTCCCAGAAGGCTATCATCGACATGGCCGCTGATCG 37682 Query 105817 TGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGTCCAACGAT--G 105874 ||| |||||| || |||| | || || | || ||| | | | Sbjct 37681 AGGTGCTTTCATTTGCCAGTCTCAATCCCTCAACATCCACTTGTCGGCTCCTTCCTTCGG 37622 Query 105875 TCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTAT 105934 || || | |||| |||||| | ||| ||||||||||||||||||| || || | || Sbjct 37621 TC--AGTTGACTTCGATGCACTTCTACGGTTGGAAGAAGGGTCTCAAGACCGGTACCTAC 37564 Query 105935 TACCTCCG 105942 |||||||| Sbjct 37563 TACCTCCG 37556 >seq113 Length=59678 Score = 147 bits (162), Expect = 3e-30 Identities = 264/381 (69%), Gaps = 6/381 (2%) Strand=Plus/Plus Query 169126 CTTGAGAAGACTTGGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGA 169185 |||||| || ||| |||||| || | | |||| |||||||||||||| || || Sbjct 56786 CTTGAGCAGCGATGGGTAGAAGTGGTCGAGGAAGTTGATGATGAGACCCTTGATATGTGA 56845 Query 169186 ACCGTCGTTATCGGCATCCGTCATGATCATGAGACGACCATACCG-AAGCTCGGAAACAT 169244 ||| |||| ||| ||| ||||||||||||| || || || || ||||| || | | Sbjct 56846 ACCATCGTGATCCTGATCGGTCATGATCATGATACTGCCGTATCGCAAGCTACTAA-CGT 56904 Query 169245 CTTGATAGTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTGGT 169304 | |||| | ||| || ||||||||||| | || | |||| | |||| ||| || Sbjct 56905 CAAGATATTGCTTGCCGTGTTGAAGACCGAGAATTTCTTTGATGGCTTTGATTTCTGCGT 56964 Query 169305 TTGATGTGAGCTGTGTGACAGAGGCATCGCGAACATTCTTACACTTCCCACGAAGAGGGA 169364 | ||| ||| | || ||| || ||||| || | ||| ||||| || || | Sbjct 56965 TCTTCATGATCTGGTCGTGAGTGGCCTCACGAACGTTGAGAAGCTTACCACGGAGCGGAA 57024 Query 169365 AGACACCGTAGTGATCACGACCAACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCG 169424 |||||||||||| |||||||| || | || || || || ||||||| ||| || | Sbjct 57025 AGACACCGTAGTTGTCACGACCCACTTCAACAAGGCCGGCAACAGCGAGAGCCTTGGCGG 57084 Query 169425 AGTCACCCTCGGTGACGATGAGCGTACATTTTCCAGATT--GTGCCGTACCCGCCTTGTT 169482 ||||||| ||||||| ||||| ||||| | || || |||| ||| || ||||| Sbjct 57085 AGTCACCTTCGGTGAGAATGAGTGTACAGTCCTTAGCTTTCCTGCC--ACCTGCATTGTT 57142 Query 169483 CGCATCATCCAATTTGGGAAT 169503 ||||| || | ||||| || Sbjct 57143 GGCATCTTCGAGCTTGGGGAT 57163 >seq67 Length=86059 Score = 125 bits (138), Expect = 8e-24 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855 |||| || || || ||| | || ||||| |||||||||||||||||||| || |||| Sbjct 4798 CCTTCGCCGAACGTCTCGTTGCCTTTGCCGCAGTTGAGGGTATCTTCTTCTCCGGCTCCT 4739 Query 94856 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 94915 || | | || | |||||||||||||| ||||| ||||| || ||| ||||||||||| Sbjct 4738 TCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGACTCACCTTCTCCAACG 4679 Query 94916 AGCTTATCTCTCGTGACGAGGGACTCCAC 94944 |||| ||||| || ||||| || || ||| Sbjct 4678 AGCTCATCTCACGCGACGAAGGTCTTCAC 4650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583161200927640