Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq59 233 6e-56 seq23 147 7e-30 seq53 145 2e-29 seq52 127 6e-24 seq100 87.8 5e-12 >seq59 Length=91690 Score = 233 bits (258), Expect = 6e-56 Identities = 926/1442 (64%), Gaps = 25/1442 (2%) Strand=Plus/Plus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 || || || |||||| | |||||||| || || ||||| |||||||||||||| || ||| Sbjct 59080 GCCATCGGTATCGATCTCGGTACTACCTACTCCTGTGTCGCTGTTTGGCAAAACGACCGT 59139 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || || | ||||| || || || |||||| | || || || ||||| || || || ||| Sbjct 59140 GTCGAGGTCATTGCCAACGACCAGGGTAACCGCACTACCCCTTCATATGTCGCCTTCACC 59199 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || | |||||| | || |||||| |||| || || || | ||| || || | || Sbjct 59200 GACTCGGAGCGTCTCATCGGTGATGCTGCCAAGAACCAGGTCGCTATGAACCCTCACAAC 59259 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGACAAATCTACA---CA 349434 || || || ||||||||||| | ||||| | ||||| ||| | || || Sbjct 59260 ACTGTCTTCGATGCTAAGCGTTTGATTGGCCGCAAGTTC----GACGACGCTGAGGTTCA 59315 Query 349435 ATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTAT 349494 || || | || || | ||||| || || ||| | || | || || || Sbjct 59316 GTCCGACATGAAGCACTGGCCTTTCGAGGTCGT--CAACAC-CGCCGGCAAGCCCCAGAT 59372 Query 349495 TGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGT 349554 | || || || ||||| | || || |||||||| || || || ||||| Sbjct 59373 CCGCATCGAGTACAAGGGTGAGAAGAAGACCTTCACTCCCGAAGAGATCTCTTCCATGGT 59432 Query 349555 TTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGT 349614 | | | || ||| || | ||||| || || | |||| || || | || || || Sbjct 59433 TCTCCTCAAGATGCGTGAGACCGCTGAGGCTTACCTCGGTGGCACCGTTAAGGACGCCGT 59492 Query 349615 TATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAG 349674 | ||||| || || || || || || | |||||| || || || ||||| || | Sbjct 59493 CGTCACTGTCCCCGCTTACTTCAACGACTCTCAGCGTCAGGCTACCAAGGATGCCGGTAT 59552 Query 349675 CATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATA 349734 |||| |||| | || ||| | | || || || || ||||||||||| || || || || Sbjct 59553 CATTTCGGGTCTCAACGTTATGCGTATCATCAACGAGCCCACTGCTGCCGCCATCGCTTA 59612 Query 349735 TGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGG 349794 || ||||| || | || ||| || || ||| | || || || ||| | || || || Sbjct 59613 CGGTCTTGACAAGAAGACTGAGGGTGAGAAGAATGTCCTCATCTTCGATCTTGGAGGAGG 59672 Query 349795 TACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGC 349854 ||| || ||||| || || || || | || ||||| || || || || || || || || Sbjct 59673 TACCTTCGATGTTTCGCTCCTTACCATCGAGGAGGGTATCTTCGAGGTCAAGGCCACCGC 59732 Query 349855 TGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAA 349914 |||||| || || |||||||| || || || || || |||||||| || || || | Sbjct 59733 TGGTGACACCCACCTTGGTGGTGAGGACTTCGACAACCGTCTCGTCAACCACTTCGTCCA 59792 Query 349915 AGAATTTAAGCGTCAAGCTAAAATTGATATTGGAGAT--AATCCTAGAGCAATGCGTCGC 349972 || || ||||| |||| | || | | || | || || | || | ||||| Sbjct 59793 GGAGTTCAAGCG-CAAG-AACAAGAAGGACTTGACTTCCAACGCTCGTGCTCTCCGTCGT 59850 Query 349973 CTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATT 350032 || | || || ||||| ||||||||||| || | || || || |||| ||| | || Sbjct 59851 CTCCGCACCGCCTGTGAGCGTGCTAAGCGCACCCTCTCGTCAGCTGCCCAGACCACCATC 59910 Query 350033 GAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTT 350092 || || || || || || || | || |||| | || || || |||||||| || Sbjct 59911 GAGATCGACTCGCTCTTCGAGGGTATTGACTTCTACACCTCCATCACCCGTGCTCGTTTC 59970 Query 350093 GAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAA 350152 || || | || || || || || || || || || || || || | Sbjct 59971 GAGGAGCTCTGCGGTGACCTCTTCTCCCACACCATCGAGCCCGTCGAGAAGGTCCTCCGT 60030 Query 350153 GA-TGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACG 350211 || | ||| | || | | || | | | ||| | || | || |||||||| || || Sbjct 60031 GACTCCAAGATTGACAAGGGTTCCG-TCCACGAAATCGTCCTTGTCGGTGGTTCCACCCG 60089 Query 350212 TATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAAC-CTTCTAGAT 350270 |||||| || || || || | || | || || || || || || | | | || | Sbjct 60090 TATTCCCAAGGTCCAGAAGCTCCTCACCGACTTCTTCAACGGACGTGAGCTCAACAAG-T 60148 Query 350271 CAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTG 350330 | || || || || || |||||||| || ||||| || || ||||| | ||| | |||| Sbjct 60149 CGATCAACCCCGACGAGGCTGTTGCCTACGGTGCCGCCGTCCAGGCCGCCATTCTCTCTG 60208 Query 350331 GAAATAAGAGTTC---TAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGC 350387 | | | | || || | | || || | || || ||||| |||| ||||| Sbjct 60209 G---TGACACCTCCGAGAAGACCCAGGACCTCCTCCTCCTCGATGTTGCTCCTCTTTCCA 60265 Query 350388 TTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTAC 350447 | || | || || | |||| || | || |||||| || || | ||||| | Sbjct 60266 TGGGTATCGAGACCGCGGGTGGTGTCTTCACCCCTCTTATCAAGAGGAACACCACTGTCC 60325 Query 350448 CTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTC 350507 | || || ||||| ||| || ||||| | || || || ||||| | || |||| Sbjct 60326 CCACCAAGAAGTCTGAAATCTTCTCTACCTACGCTGACAACCAGCCTGGTGTGTTGATTC 60385 Query 350508 AAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCC 350567 | || || || ||||| ||||| ||||| || || || || || || | || | Sbjct 60386 AGGTCTTCGAGGGTGAGCGTGCCCGCACCAAGGACAACAACTTGCTCGGCAAGTTCGAGC 60445 Query 350568 TAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTG 350627 | || || || || ||| | || ||||||||||| || ||| | |||||| | | Sbjct 60446 TCTCTGGTATCCCCCCTGCTCCTCGTGGTGTTCCTCAGATCGAGGTCACCTTCGATGTCG 60505 Query 350628 AT 350629 || Sbjct 60506 AT 60507 >seq23 Length=140287 Score = 147 bits (162), Expect = 7e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | || || || ||||| ||||| || || || || Sbjct 1779 CATACCACCACGGAGACGGAGGACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTC 1720 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| ||||| ||||| || ||||| ||||| || ||||| |||||||| || Sbjct 1719 CGAAAGAGTTCGTCCATCCTCAAGCTGCTTTCCGGCAAAAATGAGACGCTGCTGATCGGG 1660 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || |||||||| || || || || || ||||| | || || | || Sbjct 1659 AGGGATCCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCAATGGTGTCGGAAGACTC 1600 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || || | ||||| ||||| || || ||||| || |||||||| Sbjct 1599 AACCTCGAGGGTGATGGTCTTACCGGTCAGAGTCTTTACGAAGATCTGCAT 1549 Score = 140 bits (154), Expect = 1e-27 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 140546 CTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAA 140605 ||| || |||||||| |||||||| | ||||| ||||| || | ||||| |||||||| Sbjct 2424 CTCCTTCTGAATATTGTAATCAGACAGAGTTCGTCCATCCTCCAACTGTTTACCAGCAAA 2365 Query 140606 GATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATT 140665 ||| | ||| ||||| || |||||||| ||||| || |||||||| || ||||| ||||| Sbjct 2364 GATCAAACGCTGCTGGTCGGGAGGAATACCTTCCTTGTCCTGAATCTTGGCTTTGACATT 2305 Query 140666 ATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 ||||| | || || || || || ||||| | || || || || || || || || Sbjct 2304 GTCAATGGTGTCCGAGCTCTCCACCTCGAGTGTGATCGTTTTGCCAGTAAGCGTCTTGAC 2245 Query 140726 AAAAATCTGCAT 140737 ||| |||||||| Sbjct 2244 AAAGATCTGCAT 2233 Score = 136 bits (150), Expect = 1e-26 Identities = 171/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || ||||| | || || || || || || | Sbjct 2011 TTTGCATACCACCACGAAGACGGAGGACGAGATGCAAGGTGCTTTCCTTCTGGATGTTGT 1952 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | ||||| || ||||| || || |||||||||||||| ||||| ||||| | Sbjct 1951 AGTCCGAGAGGGTTCGGCCGTCTTCGAGCTGCTTTCCAGCAAAGATAAGACGCTGCTGGT 1892 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||| ||||| ||||| || ||||| || || || || || || || || | || || | Sbjct 1891 CAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCGATAGTGTCCGAGG 1832 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || |||| ||||| ||||| | || || || ||||||||||| Sbjct 1831 ACTCGACTTCGAGCGTAATGGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 1777 Score = 132 bits (146), Expect = 1e-25 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || |||| | ||||| || | || || || ||||| || ||||| Sbjct 2235 CATACCACCTCGCAATCGCAAGACAAGGTGCAAGGTGCTTTCCTTCTGAATGTTGTAATC 2176 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || ||||| | || || ||||||||||| || ||||||||||| || Sbjct 2175 CGAAAGGGTGCGACCGTCTTCCAACTGCTTACCAGCAAAGATGAGTCGTTGCTGATCGGG 2116 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || |||||||| || || || || ||||| || |||| || || | || Sbjct 2115 AGGAATACCCTCCTTATCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCCGAAGACTC 2056 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| | || | |||||||| || || || || ||||| || ||||| Sbjct 2055 GACTTCCAAAGTGATGGTCTTTCCTGTGAGCGTCTTGACAAAGATTTGCAT 2005 >seq53 Length=94643 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||| ||||| | | || |||||||| | || ||||| || ||||| || || || || Sbjct 56321 ACCGCCACGAAGACGGAGGACAAGATGCAAGGTGGACTCCTTCTGAATGTTGTAGTCGGA 56380 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || ||||||||||| || || || |||||||| ||||| ||||| |||||||| Sbjct 56381 AAGGGTACGGCCATCTTCAAGCTGCTTGCCTGCAAAGATAAGACGCTGCTGGTCAGGAGG 56440 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||| || || || |||||||| || || || || || || || | || || | || || Sbjct 56441 AATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATAGTGTCCGAGGACTCGAC 56500 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || |||| ||||| ||||| | || || ||||| |||||||| Sbjct 56501 TTCGAGCGTAATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 56548 Score = 141 bits (156), Expect = 3e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| || || || || ||||| || || || || || || Sbjct 56546 CATACCACCACGGAGGCGGAGAACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 56605 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || |||||||| || || || ||||| ||||| || || |||||||| || Sbjct 56606 CGAGAGGGTGCGGCCATCTTCGAGCTGCTTACCAGCGAAGATGAGTCGCTGCTGATCGGG 56665 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || ||||| || |||||||| || || || ||||| || || | || || | || Sbjct 56666 TGGGATGCCTTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTC 56725 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || || | ||||| ||||| || || || ||||| |||||||| Sbjct 56726 AACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 56776 >seq52 Length=95535 Score = 127 bits (140), Expect = 6e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || || ||||| || || || || || || || || || || Sbjct 17622 ACCACCACGAAGGCGGAGGACGAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGA 17681 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || |||||||| || || || || || ||||| ||||| ||||||||||| || Sbjct 17682 GAGGGTACGACCATCTTCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCAGGGGG 17741 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||| ||||| || ||||| || || || || || || || || | || || | || || Sbjct 17742 AATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGAC 17801 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | ||||| || || || ||||| ||||| |||||||| Sbjct 17802 CTCGAGGGTGATGGTCTTACCCGTGAGGGTTTTAACAAAGATCTGCAT 17849 >seq100 Length=67640 Score = 87.8 bits (96), Expect = 5e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 ||||||||||| | | || || || || || |||||||| || || || || || || Sbjct 61208 ATACCACCACGGAGACGGAGGACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCC 61149 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 || | || || || || || || || || || || ||||| ||||| ||||| || || Sbjct 61148 GAGAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCGGGG 61089 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687 || || || || || ||||| || || || || || || || || | || || | || Sbjct 61088 GGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCC 61029 Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTTAGTG 140718 || ||||| || | ||||| || | | ||| Sbjct 61028 ACCTCAAGGGTGATGGTCTTACCTGATGGTG 60998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514989182654783