Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq36 322 5e-83 seq113 113 5e-20 seq67 107 2e-18 >seq36 Length=116313 Score = 322 bits (356), Expect = 5e-83 Identities = 533/757 (70%), Gaps = 12/757 (2%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| || || | ||||| ||||| | ||| | | | | | ||||||||| Sbjct 39266 TCATGCGTGTTGCTGTTGGTATTCACGGCCAGGACATCGAGAGCGCCATCGAGACGTACA 39207 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || | ||| |||||||||||||| |||||| |||||||||| |||||||||||||| Sbjct 39206 ACCTCATGTCGCAAAAGTACTTTACTCACGCCTCGCCAACCCTCTTCAACGCTGGTACTC 39147 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 ||||| ||| | ||| ||| ||||| || | ||||||||||||||||||||||||| Sbjct 39146 CCCACCCACAGCTCTCGTCCTGTTTCCTTGTTACCATGAAGGATGACTCGATCGACGGCA 39087 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 | ||||| || |||||| |||||| ||||||||| | ||||| || ||| | Sbjct 39086 TTTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGACCGCCGGTGGCATTGGTTTGA 39027 Query 53433 AC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGAT 53491 || | | | | | || | | ||| | || || || ||||| ||| | | Sbjct 39026 ACATTCACTG-CATTCGAGGTACTGGCTCCTACATTGCCGGCACCAACGGTGTCAGCAAC 38968 Query 53492 GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGT 53551 || ||||| || ||||| || |||||||||||||| ||||| |||||| ||||||||||| Sbjct 38967 GGTATCGTTCCCATGCTTCGTGTCTTCAACAACACCGCCCGTTACGTCGACCAGGGTGGT 38908 Query 53552 GGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAG 53611 ||||| || | || ||||||||| | ||||| |||||| | || | | ||| Sbjct 38907 AACAAGCGTCCCGGTGCCTTTGCCATCTACATTGAGCCTTGGCACTCGGATGTCTTTGAG 38848 Query 53612 TTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TAC 53670 || ||||| |||| ||| || ||| | ||||| | || |||||| || || ||| Sbjct 38847 TTCCTCGACTTGCGCAAGAACCACGGTAAGGAAGAAGTTCGTGCCCGTGAACTCTTCTAC 38788 Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCT 53730 ||||| ||| |||| || ||||||||| | | ||| ||| || ||| || |||| || Sbjct 38787 -GCTCTCTGGGTTCCCGATCTCTTCATGAAGAGGGTTGAGCAGAACGGTGATTGGTCGCT 38729 Query 53731 GATGTGCCCGAACGAGTGCCCCGG-CCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAG- 53788 |||||||| |||||||||||||| | | | | || ||||||||| ||||| |||| Sbjct 38728 CATGTGCCCCAACGAGTGCCCCGGTCTTGCCGACTG-CTACGGTGAAGAGTT---CGAGC 38673 Query 53789 ATGTAT-CGGACG-TACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGG 53846 | | | || || |||| | | || |||| ||| | |||||||| | || Sbjct 38672 GTCTCTACGAGCGTTACGAGGCCGAAGGTCGCTCAAAGCGCACCGTCAAGGCTCAGAAGC 38613 Query 53847 TATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGG 53906 | ||| | || |||||| || ||| ||||| || | || | ||| |||||||| Sbjct 38612 TCTGGTACGCCATCCTCGAGTCGCAGACCGAGACCGGTAACCCCTTCATCCTCTACAAGG 38553 Query 53907 ATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943 | | | |||| ||| ||||||||||||| |||| Sbjct 38552 ACGCTGCCAACCGCAAGTCCAACCAGAAGAACCTCGG 38516 Score = 134 bits (148), Expect = 2e-26 Identities = 523/811 (64%), Gaps = 36/811 (4%) Strand=Plus/Minus Query 55138 GAACCTGAACCGGGTCATCGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAA 55197 |||| ||||| ||||||| | || |||||||| ||| | ||| || || || Sbjct 38350 GAACTTGAACAAAATCATCGATATCAACTACTACCCTGTTGAGGAGGCTCGTCGTTCTAA 38291 Query 55198 CCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCT 55257 | | || ||||| ||||| | |||||||| ||||| | ||||| ||||||||| | Sbjct 38290 CATGCGTCACCGCCCCATTGGTATCGGTGTCCAGGGTCTCGCCGATGCCTTCATGATCAT 38231 Query 55258 CGGATTGCCCTTCGACTCGGAACCTGCTCGAGAAATTAACCAGGACATCTTC-AGTCGCA 55316 || | |||| || ||| ||||| | ||| | |||||| || | || Sbjct 38230 GGGTTACGCCTTTGAGTCGCCCGAGGCTCGTCGCTTGAACGTCCAGATCTTCGAGAC-CA 38172 Query 55317 TCTACTTTGCAGCGCTCGAGGAGTCGTGTCATCTGGCT-ATGAGCGAGGGGACCTACGAG 55375 ||||| || || |||||| ||||| | |||| | |||| | || ||||||||| Sbjct 38171 TCTACCACGCCGCTCTCGAGCGATCGTGCGAGTTGGCCCAGGAGC-ATGGCACCTACGAG 38113 Query 55376 ACGTTCCGTGATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGGGGCAAGTCT 55435 || | | | ||| || || | |||| ||||||| ||| | ||||| | | Sbjct 38112 ACCTACGCCGGTTCCCCTGCCTCCCAGGGTGAACTCCAGTACGACATGTGGGG----TGT 38057 Query 55436 GACCCC-----ATGTTTGACAA--------GTTGAAGCATGACATTCACTTGTGGGGCCT 55482 ||||| || |||| | | | ||| | || | | || || Sbjct 38056 TACCCCTTCCGATCTTTGGGACTGGGCTTCGCTCAAGGCCAAGATCGCCAAGCACGGTCT 37997 Query 55483 ACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAA 55542 |||||||| || | | || || ||||| ||||| || || ||||||| |||| Sbjct 37996 TCGCAACTCGCTCTTGCTCGCTCCCATGCCTACCGCATCCACAAGTCAGATCTTGGGTTT 37937 Query 55543 CAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGA 55602 |||||| |||||||| ||||| ||||||||||| || || ||| || ||||| Sbjct 37936 CAACGAATGCTTCGAGCCCTACACCTCCAACATCTACTCTCGTCGTGTCCTTGCTGGTGA 37877 Query 55603 GTTTGTCATGATCAACAAGCACCTCGT----CAAGGACCTGCAGAAGATCAACAA--GTG 55656 || || | || ||| | | | || | || || | || ||| | ||| Sbjct 37876 ATTC--CAGG-TCGTCAACC-CTTGGTTGCTCCGCGAACTC--GTCGAGCAAGGATTGTG 37823 Query 55657 GAACCCGCAGATCAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCAGAA---TCTGGA 55713 |||| || |||| |||| | |||| || ||| ||||||| || | Sbjct 37822 GAACGACACCATGAAGAACCGTATTATCGCTCACGGTGGTTCCATCCAGAACGTTCCTGG 37763 Query 55714 GATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCT 55773 |||||| ||| ||||| || | ||| ||| || |||||||| | |||||| | | Sbjct 37762 TATTCCTGACCGTATCAAGAAGCTCTACAAGACTGTTTGGGAGATCTCCCAGAAGGCTAT 37703 Query 55774 GATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTT 55833 || |||||| |||||||| ||||| | ||| |||||| || || || |||||| Sbjct 37702 CATCGACATGGCCGCTGATCGAGGTGCTTTCATTTGCCAGTCTCAATCCCTCAACATCCA 37643 Query 55834 CATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGG 55893 | || | |||||| | | |||||| ||||||||||| ||||| ||||||||||| Sbjct 37642 CTTGTCGGCTCCTTCCTTCGGTCAGTTGACTTCGATGCACTTCTACGGTTGGAAGAAGGG 37583 Query 55894 ACTCAAGACGGGTATGTACTATCTGCGGACC 55924 |||||||| |||| ||||| || || ||| Sbjct 37582 TCTCAAGACCGGTACCTACTACCTCCGTACC 37552 >seq113 Length=59678 Score = 113 bits (124), Expect = 5e-20 Identities = 272/403 (67%), Gaps = 13/403 (3%) Strand=Plus/Plus Query 152769 GTTGAGGACCAAGCCCTTGATGTGCGATCCGTCAAGATCCGCGTCGGTCATGATCATCAG 152828 ||||| || | |||||||| || || || || ||||| |||||||||||||| | Sbjct 56819 GTTGATGATGAGACCCTTGATATGTGAACCATCGTGATCCTGATCGGTCATGATCATGAT 56878 Query 152829 ACGACCGTAGCGCAGGTCACGTAGTGACCCG-TAGACCTTTCCATGTTGAAGCCCGAGGA 152887 || ||||| |||| | || || | | | || ||| || |||||||| ||||| | Sbjct 56879 ACTGCCGTATCGCAAGCTAC-TAACGTCAAGATATTGCTTGCCGTGTTGAAGACCGAGAA 56937 Query 152888 TCTTTTTGAGG--TTGGAAAATTCCTCATTATCGGTCACCTGTTTCACCGTGGCATCCCG 152945 | | ||||| | || || ||| | || | | | ||| | ||||| || || Sbjct 56938 TTTCTTTGATGGCTTTGAT--TTCTGCGTTCTTCATGATCTGGTCGTGAGTGGCCTCACG 56995 Query 152946 AACATTGCGCGGCTTTCCCCGGAGTGGAAACACGCCGAACGCGTTGCGGCCTACAACGCT 153005 ||| ||| | |||| || ||||| ||||| || ||| | || || || || | Sbjct 56996 AACGTTGAGAAGCTTACCACGGAGCGGAAAGACACCGTAGTTGTCACGACCCACTTCAAC 57055 Query 153006 CAGACCGGCAATAGCAAGGGCTTTCGCCGAGTCACCCTCGGTGATAATAAGCGTACAGTC 153065 || ||||||| ||| || || || || |||||||| ||||||| ||| || |||||||| Sbjct 57056 AAGGCCGGCAACAGCGAGAGCCTTGGCGGAGTCACCTTCGGTGAGAATGAGTGTACAGTC 57115 Query 153066 GTGAGA---CCGATGAGTACCGGCCCAGTTGGCGTCGTCAAGCTTGGGGATTCCCGTGAT 153122 | || || || ||| || |||||| || || ||||||||||| ||||| Sbjct 57116 CTTAGCTTTCC--TGCC-ACCTGCATTGTTGGCATCTTCGAGCTTGGGGATGTTGGTGAT 57172 Query 153123 CCTGCTTTTCTTAGAGCCGTCGGTTTTCTTCAGTTCCTTGGTC 153165 |||| | ||| |||||||| ||||| || || ||||| Sbjct 57173 CCTGGTACGCTTGTGACCGTCGGTCTTCTTGAGCGCC-TGGTC 57214 Score = 82.4 bits (90), Expect = 8e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 119083 GTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGCTCCTCGTCGTT 119142 |||||| |||||||||||||| ||||||| |||||| || || ||| || |||| Sbjct 58010 GTTGGCGAGCTTGGCACCGTAACCGTTCCTACCACCCGTAACTTTGGCCTCGTCATCGTC 58069 Query 119143 GTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGAT 119187 ||||||||| || | ||||| || ||||||||||| ||||| Sbjct 58070 GTAGTTGGACGAAGTAAGGAGGTGGCCGAAGATGAGCTCTGGGAT 58114 >seq67 Length=86059 Score = 107 bits (118), Expect = 2e-18 Identities = 308/469 (66%), Gaps = 10/469 (2%) Strand=Plus/Plus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 || || |||||||| ||||||||||| | ||| ||||||| |||||| || |||| Sbjct 4693 AGTCCGGGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAG 4752 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCAT--CGGAAG 74922 ||||| || || || |||||||| || || |||| ||||| | || | ||| | Sbjct 4753 AAGATACCCTCAACTGCGGCAAAGGCAACGAGACGTTCGGCGAAGGTGGCTTTGCGGTCG 4812 Query 74923 -TCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCT 74981 | |||||| ||||||| || || || | ||||| | |||| || |||| || Sbjct 4813 CTGATCCAACGAAGAGCCCAGTCGGCCTTCTGCTTGACGACGGGGATGGTCTCGACGGCG 4872 Query 74982 TGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTAC 75041 | |||||| | | || || || || | | |||| || | || ||||| Sbjct 4873 TCAAAGAGGAATTCTCGCTGCTCAGGCTCACGAATGTAGGTGTCGATGAGGAGCGAGTAA 4932 Query 75042 GTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCA 75101 ||||| || ||||| ||| | | |||| | | ||||| | || ||||| ||| Sbjct 4933 GTCTCGGAGTGAATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGCA 4992 Query 75102 ATCTGTACATC--CTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGG 75159 ||| || || ||||| || | ||| ||||| ||||||| || || || | Sbjct 4993 GCCTGAACTTCGGAACTGAAACGCTC--GACGAGGTTCTCGTTGACGATACCATCGGAAG 5050 Query 75160 CGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAG---TTTGT 75216 | ||||| || || || || ||||||||| ||||| | ||| |||| |||| Sbjct 5051 CAGCGAAGAAGGCGAGGACGTGGGAGATAAAGTGACGCTCGTTGTCGTTGAGCTTGTTGT 5110 Query 75217 CCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 |||| || | |||||| | | || ||||||||| | ||||| || Sbjct 5111 CCCAGTCATGGAGGTCCTTGGAAAGGTCGATCTCCTCGGCGGTCCAAAA 5159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547122556027800