Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq9 116 3e-21 >seq9 Length=211508 Score = 116 bits (128), Expect = 3e-21 Identities = 418/656 (64%), Gaps = 32/656 (5%) Strand=Plus/Plus Query 29834 AGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCC 29893 ||| |||| ||||| || || | ||||||||| |||| || || || |||| ||| Sbjct 209716 AGTTTGGGGAAGGGGAGTGGTTCTCGTTCGAGCTGAATCTTGAGTGGCTCTACGTGATCT 209775 Query 29894 AGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACG 29953 ||||||||||||||| |||| | | || | || || || ||||||| Sbjct 209776 TTGTAGACGTGAGCGTCACCCATAGAGAGAACGAGTTCCTTAGGCTCGCAATCGGTGACT 209835 Query 29954 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 30013 | ||| |||||||| ||||| | || |||||| || ||||| ||||| || || | || Sbjct 209836 TTAGCGATCATGTAAGTGAGCAAAGCGTAGCTAGCAATGTTGAAGGGGACTCCCAATCCA 209895 Query 30014 ATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCT---------------CTCCGTCG 30058 | || | || | || || | |||||| ||||||| || | || Sbjct 209896 AGATCGCAGGAACGTTGATACATCTGACATGAGAGCTGCTTTTTACCCTGACCTTTGGCG 209955 Query 30059 C-----TC----------ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATG 30103 || ||| | || ||||| | ||| || || |||||||||||| Sbjct 209956 TAGGCGTCGAGGTTAGAGACGAAGAATTGACAGAACATGTGACAAGGTGGAAGAGCCATG 210015 Query 30104 AGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTC 30163 ||| | ||||| || ||||| |||| | | ||| | | || || |||||| Sbjct 210016 AGGGAGAGATCTTTAGGATTCCATGCGCTGAGCAAGATTCTGCGATCGGTGGGATTGTTC 210075 Query 30164 CTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTC 30223 |||| ||| | | | | | || ||||| || || || | |||||| | || Sbjct 210076 TTGATCTTGTCGATGACATCGCGAAGTTGATCGACGCCTTGGCCAGTGTAGTC-GGTGTC 210134 Query 30224 A-TGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 | ||| |||| || || || || || | ||| ||||| ||||| || || ||||| || Sbjct 210135 ACAGTCTTTGTATTCGGCGCCAAAGTGACGCCATTGGAAACCGTAGACTGGACCCAGATC 210194 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 || ||| ||||||| || || | ||| | || |||| || |||||| |||| Sbjct 210195 ACCTTCTCTTCTGTGCTGCAATCCTCGAGAGTCAAGGAACTCTCGTGACCCGTTGCCGTC 210254 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCA 30402 |||||| | || || || || | |||| ||||||| || || |||||||| Sbjct 210255 CCAGATGTGCACACCTTTGTCTGTGAGCAGCTTGGAGTCGGTCTTTCCAGCAACGAACCA 210314 Query 30403 CAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 30458 || |||||||| | || | | ||||| | ||| || ||||| || |||| Sbjct 210315 GAGTAGCTCCTCGAGAACACCGCGGAAGAAGACACGCTTTGTTGTGAGCAGAGGAA 210370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406242751984812