Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq9 136 4e-27 >seq9 Length=211508 Score = 136 bits (150), Expect = 4e-27 Identities = 425/662 (64%), Gaps = 32/662 (5%) Strand=Plus/Plus Query 6494 ATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATG 6553 || ||||| | |||||| || | || ||||||| ||||| ||| ||| |||| | | Sbjct 209710 ATGTTGAGTTTGGGGAAGGGGAGTGGTTCTCGTTCGAGCTGAATCTTGAGTGGCTCTACG 209769 Query 6554 TGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCC 6613 || | ||||| || || || |||| | | || || ||| ||| | | | Sbjct 209770 TGATCTTTGTAGACGTGAGCGTCACCCATAGAGAGAACGAGTTCCTTAGGCTCGCAATCG 209829 Query 6614 ACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCT 6673 ||| | |||||||||||| ||||||| |||||| |||||||||||||| || || || Sbjct 209830 GTGACTTTAGCGATCATGTAAGTGAGCAAAGCGTAGCTAGCAATGTTGAAGGGGACTCCC 209889 Query 6674 AACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCC------------CCA 6721 || || | || | || |||||||| | ||| || || |||| | || Sbjct 209890 AATCCAAGATCGCAGGAACGTTGATACATCTGACATGAGAGCTGCTTTTTACCCTGACCT 209949 Query 6722 TTCGC------------------GACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGC 6763 || || |||| ||||||| |||| |||| || || || || Sbjct 209950 TTGGCGTAGGCGTCGAGGTTAGAGACGAAGAATTGACAGAACATGTGACAAGGTGGAAGA 210009 Query 6764 GCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGG 6823 ||||| || | |||||| || || ||||| |||| | || ||| || | || || Sbjct 210010 GCCATGAGGGAGAGATCTTTAGGATTCCATGCGCTGAGCAAGATTCTGCGATCGGTGGGA 210069 Query 6824 TTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCC 6883 || ||| | ||||||| || | | || || || | || || || | ||||| Sbjct 210070 TTGTTCTTGATCTTGTCGATGACATCGCGAAGTTGATCGACGCCTTGGCCAGTGTAGTCG 210129 Query 6884 GCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCC 6943 | || | | || || || |||||||| | ||| ||||| |||||||| || ||| Sbjct 210130 GTGTCACAGTCTTTGTATTCGGCGCCAAAGTGACGCCATTGGAAACCGTAGACTGGACCC 210189 Query 6944 AAGTCGCCCTC-CTCCCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTG 7002 | || || || || | | | | | || || || ||| || || ||||| ||||||| Sbjct 210190 AGATCACCTTCTCTTCTGTGCT-GCAATCCTCGAGAGTCAAGGAACTCTCGTGACCCGTT 210248 Query 7003 AGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCAC 7062 |||||||||| | ||| || | | |||| ||||| || || || || Sbjct 210249 GCCGTCCCAGATGTGCACACCTTTGTCTGTGAGCAGCTTGGAGTCGGTCTTTCCAGCAAC 210308 Query 7063 GAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGG 7122 |||||| || |||||||||| || || || | ||||| || || || ||||| || Sbjct 210309 GAACCAGAGTAGCTCCTCGAGAACACCGCGGAAGAAGACACGCTTTGTTGTGAGCAGAGG 210368 Query 7123 AA 7124 || Sbjct 210369 AA 210370 Score = 136 bits (150), Expect = 4e-27 Identities = 425/662 (64%), Gaps = 32/662 (5%) Strand=Plus/Minus Query 34221 TTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGT 34280 |||| ||||| || || || ||||| | || || || |||||||||| || |||| Sbjct 210370 TTCCTCTGCTCACAACAAAGCGTGTCTTCTTCCGCGGTGTTCTCGAGGAGCTACTCTGGT 210311 Query 34281 TCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACG 34340 |||| || || || ||||| |||| | | || ||| | |||||||||| Sbjct 210310 TCGTTGCTGGAAAGACCGACTCCAAGCTGCTCACAGACAAAGGTGTGCACATCTGGGACG 210251 Query 34341 CTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAG-GAGGGCGAC 34399 ||||||| ||||| || || ||| || || || | | | | | || || || || Sbjct 210250 GCAACGGGTCACGAGAGTTCCTTGACTCTCGAGGATTGC-AGCACAGAAGAGAAGGTGAT 210192 Query 34400 TTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAA 34459 |||| || |||||||| ||||| ||| | |||||||| || || || | | || Sbjct 210191 CTGGGTCCAGTCTACGGTTTCCAATGGCGTCACTTTGGCGCCGAATACAAAGACTGTGAC 210132 Query 34460 GCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGG 34519 | ||||| | || || || | || || || | | || ||||||| | ||| Sbjct 210131 ACCGACTACACTGGCCAAGGCGTCGATCAACTTCGCGATGTCATCGACAAGATCAAGAAC 210072 Query 34520 AACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATG 34579 || || || | || ||| || | |||| ||||| || || |||||| | || ||| Sbjct 210071 AATCCCACCGATCGCAGAATCTTGCTCAGCGCATGGAATCCTAAAGATCTCTCCCTCATG 210012 Query 34580 GCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTC------------------GCG 34621 || || || || || |||| |||| ||||||| |||| || Sbjct 210011 GCTCTTCCACCTTGTCACATGTTCTGTCAATTCTTCGTCTCTAACCTCGACGCCTACGCC 209952 Query 34622 AATGG------------GGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGG 34669 || || | |||| || || ||| | |||||||| || | || | || Sbjct 209951 AAAGGTCAGGGTAAAAAGCAGCTCTCATGTCAGATGTATCAACGTTCCTGCGATCTTGGA 209892 Query 34670 TTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 || || || || |||||||||||||| |||||| ||||||| |||||||||||| | ||| Sbjct 209891 TTGGGAGTCCCCTTCAACATTGCTAGCTACGCTTTGCTCACTTACATGATCGCTAAAGTC 209832 Query 34730 GTGGGGTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAAC 34789 | | | ||| ||| || || | | |||| || || || ||||| | Sbjct 209831 ACCGATTGCGAGCCTAAGGAACTCGTTCTCTCTATGGGTGACGCTCACGTCTACAAAGAT 209772 Query 34790 CACATCGAGCGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAA 34849 ||| | |||| ||| ||| ||||| ||||||| || | || |||||| | ||||| Sbjct 209771 CACGTAGAGCCACTCAAGATTCAGCTCGAACGAGAACCACTCCCCTTCCCCAAACTCAAC 209712 Query 34850 AT 34851 || Sbjct 209711 AT 209710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448185853591920