Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq52 194 4e-44 seq53 179 9e-40 seq23 161 2e-34 seq100 136 9e-27 >seq52 Length=95535 Score = 194 bits (214), Expect = 4e-44 Identities = 178/225 (79%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| |||||||| ||||| || || |||||||| || |||| ||||| Sbjct 17628 ACGAAGGCGGAGGACGAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAGAGGGT 17687 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| |||||||| || |||||||| || || || || ||||| |||| || Sbjct 17688 ACGACCATCTTCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCAGGGGGAATACC 17747 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||||||||||||| || ||||| ||||||||||| || || |||||||| Sbjct 17748 TTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAG 17807 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| ||||| |||||||| || || ||||| | |||||| || Sbjct 17808 GGTGATGGTCTTACCCGTGAGGGTTTTAACAAAGATCTGCATCTT 17852 >seq53 Length=94643 Score = 179 bits (198), Expect = 9e-40 Identities = 173/222 (78%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | |||||||| || | |||||||| || || ||||| || || | |||||| Sbjct 56327 ACGAAGACGGAGGACAAGATGCAAGGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGGGT 56386 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| |||||||||||||| |||||||| || || ||||||||||||| || Sbjct 56387 ACGGCCATCTTCAAGCTGCTTGCCTGCAAAGATAAGACGCTGCTGGTCAGGAGGAATGCC 56446 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||| ||||| || ||||| ||||| ||||| ||| || || ||||| Sbjct 56447 CTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATAGTGTCCGAGGACTCGACTTCGAG 56506 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || | |||||| ||||| | |||||| Sbjct 56507 CGTAATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 56548 Score = 179 bits (198), Expect = 9e-40 Identities = 171/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || |||| ||||| | |||||| Sbjct 56565 AGAACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCT 56624 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| || || || || || || || | |||||||||||| Sbjct 56625 TCGAGCTGCTTACCAGCGAAGATGAGTCGCTGCTGATCGGGTGGGATGCCTTCCTTGTCC 56684 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || ||||||||||| ||| ||||||||||| ||||| ||| Sbjct 56685 TGAATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTC 56744 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTATGG 211121 || || ||||| ||||| ||||| | |||||| | |||| Sbjct 56745 TTGCCGGTGAGGGTCTTGACAAAGATCTGCATCTGATGG 56783 >seq23 Length=140287 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| || || ||||| ||||||||||| || |||| ||| || | |||||| Sbjct 1760 AGGACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCGAAAGAGTTCGTCCATCC 1701 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || || || || || || || || || ||||| | || ||||||||| Sbjct 1700 TCAAGCTGCTTTCCGGCAAAAATGAGACGCTGCTGATCGGGAGGGATCCCCTCCTTGTCC 1641 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| || |||||||| || ||||||||||| ||||| ||| Sbjct 1640 TGAATCTTGGCCTTGACGTTGTCAATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTC 1581 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || ||||||||||| || | |||||| Sbjct 1580 TTACCGGTCAGAGTCTTTACGAAGATCTGCAT 1549 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| || || | ||| || || |||||||| || |||| ||||| Sbjct 1998 ACGAAGACGGAGGACGAGATGCAAGGTGCTTTCCTTCTGGATGTTGTAGTCCGAGAGGGT 1939 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || ||||| |||||||| || || |||||||| || || |||||||| |||| || Sbjct 1938 TCGGCCGTCTTCGAGCTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCAGGGGGAATGCC 1879 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||||||||||||| || ||||| ||||| ||||| ||| || || ||||| Sbjct 1878 TTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCGATAGTGTCCGAGGACTCGACTTCGAG 1819 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || | ||||| || || | |||||| Sbjct 1818 CGTAATGGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 1777 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 || ||||| | ||| ||| || || || || ||||| | || || | |||||| ||| Sbjct 2441 ACTAGGTGCAAGGTGCTCTCCTTCTGAATATTGTAATCAGACAGAGTTCGTCCATCCTCC 2382 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 | ||| || || || ||||| | || || ||||| ||||||| |||||||||||||| Sbjct 2381 AACTGTTTACCAGCAAAGATCAAACGCTGCTGGTCGGGAGGAATACCTTCCTTGTCCTGA 2322 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 ||||| ||| || || || |||||||| ||||| || |||||||| |||||||| || Sbjct 2321 ATCTTGGCTTTGACATTGTCAATGGTGTCCGAGCTCTCCACCTCGAGTGTGATCGTTTTG 2262 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || ||||| ||||| | |||||| Sbjct 2261 CCAGTAAGCGTCTTGACAAAGATCTGCAT 2233 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||||||||| | ||| || || || ||||| ||||||| |||||| | || ||||| Sbjct 2214 GACAAGGTGCAAGGTGCTTTCCTTCTGAATGTTGTAATCCGAAAGGGTGCGACCGTCTTC 2155 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 || |||||| || || ||||| || ||||| || || ||||||| || ||||| ||||| Sbjct 2154 CAACTGCTTACCAGCAAAGATGAGTCGTTGCTGATCGGGAGGAATACCCTCCTTATCCTG 2095 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 |||||| || || || ||||| ||||| || || || || | |||||| ||||| Sbjct 2094 GATCTTGGCCTTGACATTGTCGATCGTGTCCGAAGACTCGACTTCCAAAGTGATGGTCTT 2035 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| ||||| ||||| | ||||| Sbjct 2034 TCCTGTGAGCGTCTTGACAAAGATTTGCAT 2005 >seq100 Length=67640 Score = 136 bits (150), Expect = 9e-27 Identities = 141/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || || ||||| || |||||||| || |||| ||||| | || || Sbjct 61190 AGGACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCC 61131 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| || || || ||||| || || | || ||||||||| Sbjct 61130 TCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCC 61071 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||||||||| || || ||||| || ||||| ||| Sbjct 61070 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTC 61011 Query 211083 TTTCC 211087 || || Sbjct 61010 TTACC 61006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158949111814265