Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq23 87.8 2e-12 seq53 84.2 2e-11 >seq23 Length=140287 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || || ||| ||||| || || || || | ||| |||||| | || ||| Sbjct 1757 ACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCGAAAGAGTTCGTCCATCCTCA 1698 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| || || ||||| || ||||||||||| |||| || | | ||| |||||| Sbjct 1697 AGCTGCTTTCCGGCAAAAATGAGACGCTGCTGATCGGGAGGGATCCCCTCCTTGTCCTGA 1638 Query 39196 ATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 || || |||| ||| | | | || ||| ||||| || || | ||||| | || Sbjct 1637 ATCTTGGCCTTGA-CGTTGTCAATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTT 1579 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||| || || || ||||| ||||| Sbjct 1578 ACCGGTCAGAGTCTTTACGAAGATCTGCAT 1549 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/200 (70%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 39088 GTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCC 39147 |||||||| || || ||||| ||||| | || |||||| | || || | |||||| || Sbjct 2429 GTGCTCTCCTTCTGAATATTGTAATCAGACAGAGTTCGTCCATCCTCCAACTGTTTACCA 2370 Query 39148 GCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTG 39207 ||||| || | |||||||||||||| || | | || |||||| || || |||| Sbjct 2369 GCAAAGATCAAACGCTGCTGGTCGGGAGGAATACCTTCCTTGTCCTGAATCTTGGCTTTG 2310 Query 39208 AGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGC 39264 | | | | || || ||| |||||| || | ||||| |||| || || ||| Sbjct 2309 ACATTGTCAATGGTGTCCGAGCT---CTCCACCTCGAGTGTGATCGTTTTGCCAGTAAGC 2253 Query 39265 GTTTTAACAAAGATTTGCAT 39284 || || |||||||| ||||| Sbjct 2252 GTCTTGACAAAGATCTGCAT 2233 >seq53 Length=94643 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || |||| ||| || || | || |||||||| ||||| ||||| Sbjct 56357 CTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCTTCAAGCTGCTTGCCTGCAAA 56416 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 ||||||||||||||||| | || | || ||| |||||| || || |||| ||| Sbjct 56417 GATAAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGT 56475 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | || || ||||| || || | ||| || | || || |||| || || | Sbjct 56476 TGTCGATAGTGTCCGAGGACTCGACTTCGAGCGTAATGGTCTTGCCGGTCAAAGTCTTGA 56535 Query 39272 CAAAGATTTGCAT 39284 ||||||| ||||| Sbjct 56536 CAAAGATCTGCAT 56548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429474083476493