Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq23 111 1e-19 seq52 102 6e-17 >seq23 Length=140287 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || || || ||||||||||| ||||| || || | || Sbjct 2233 ATGCAGATCTTTGTCAAGACGCTTACTGGCAAAACGATCACACTCGAGGTGGAGAGCTCG 2292 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| | || ||| ||||| |||||| | || || || || Sbjct 2293 GACACCATTGACAATGTCAAAGC-CAAGATTCAGGACAAGGAAGGTATTCCTCCCGACCA 2351 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||| || ||||| || ||||| |||| || | ||| ||| | |||||||| Sbjct 2352 GCAGCGTTTGATCTTTGCTGGTAAACAGTTGGAGGATGGACGAACTCTGTCTGATTACAA 2411 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || || || ||| ||| || || ||||||| Sbjct 2412 TATTCAGAAGGAGAGCACCTTGCACCTAGTTTT 2444 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||| | || || || || || || |||||||| || ||| || Sbjct 1777 ATGCAGATTTTCGTCAAGACCTTGACCGGCAAGACCATTACGCTCGAAGTCGAGTCCTCG 1836 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || || |||| | || || ||||| ||||| | || || || || Sbjct 1837 GACACTATCGACAACGTTAAGGC-CAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCA 1895 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| || || || || ||||||| || || | || ||||| Sbjct 1896 GCAGCGTCTTATCTTTGCTGGAAAGCAGCTCGAAGACGGCCGAACCCTCTCGGACTACAA 1955 Query 23790 CATACAAAAAGAGTCCACATTACAT 23814 ||| || || || ||| || ||| Sbjct 1956 CATCCAGAAGGAAAGCACCTTGCAT 1980 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || ||||| ||||| || |||||| | ||||| || || || Sbjct 2005 ATGCAAATCTTTGTCAAGACGCTCACAGGAAAGACCATCACTTTGGAAGTCGAGTCTTCG 2064 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | || || || ||| | || || ||||| Sbjct 2065 GACACGATCGACAATGTCAAGGCCAAGA-TCCAGGATAAGGAGGGTATTCCTCCCGATCA 2123 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCAC--TTTAGGCGATTAC 23787 || || | || ||||| || || || ||||||||| ||||| ||| || ||||| Sbjct 2124 GCAACGACTCATCTTTGCTGGTAAGCAGTTGGAAGACGGTCGCACCCTTTCGG--ATTAC 2181 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||| || || || ||| || || | || || | |||||||| || Sbjct 2182 AACATTCAGAAGGAAAGCACCTTGCACCTTGTCTTGCGATTGCGAGGTGG 2231 >seq52 Length=95535 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23604 ACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGA 23663 ||| || |||||||| || ||||||||||||||||| || || ||||| ||||| || || Sbjct 17856 ACTCAAGATGCAGATCTTTGTTAAAACCCTCACGGGTAAGACCATCACCCTCGAGGTCGA 17797 Query 23664 CTCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCC 23723 || ||||||| | || | | || || || ||||| |||||| | || || Sbjct 17796 GTCTTCGGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCC 17737 Query 23724 AGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGA 23783 ||||| |||||| | || || ||||| || || || ||||| | || || | || Sbjct 17736 TGATCAGCAGCGTCTCATCTTCGCCGGTAAGCAGCTCGAAGATGGTCGTACCCTCTCGGA 17677 Query 23784 TTACAACATACAAAAAGAGTCCAC 23807 |||||||| || || || ||||| Sbjct 17676 CTACAACATCCAGAAGGAATCCAC 17653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337953323619788