Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq23 114 3e-20 seq53 111 4e-19 seq52 105 2e-17 seq100 86.0 1e-11 >seq23 Length=140287 Score = 114 bits (126), Expect = 3e-20 Identities = 159/221 (72%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| | || || || ||||| |||||||||||||| || | | ||||| Sbjct 1767 GAGACGGAGGACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCGAAAGAGTTCG 1708 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 ||||| || || ||||| ||||| || || || | |||||| || | | ||| || Sbjct 1707 TCCATCCTCAAGCTGCTTT--CCGGCAAAAATGAGACGCTGCTGATCGGGAGGGATCCCC 1650 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || ||||| || ||||| | || | | |||| ||| ||| || || || Sbjct 1649 TCCTTGTCCTGAATCTTGGCCTTGACGTTGTCAATGGTGTCGGAAGACTCAACCTCGAGG 1590 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || |||||||| ||||||| |||||| Sbjct 1589 GTGATGGTCTTACCGGTCAGAGTCTTTACGAAGATCTGCAT 1549 Score = 86.0 bits (94), Expect = 1e-11 Identities = 149/215 (69%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| ||||| | || || || ||||||||||| || | | |||| || || Sbjct 1989 GAGGACGAGATGCAAGGTGCTTTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGGCCGTC 1930 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 ||| || ||||| || || |||||||| | ||||||||| | | || |||||||| Sbjct 1929 TTCGAGCTGCTTT--CCAGCAAAGATAAGACGCTGCTGGTCAGGGGGAATGCCTTCCTTG 1872 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 || || || || || || | || | |||| || ||| ||||| || ||||| Sbjct 1871 TCCTGGATCTTGGCCTTAACGTTGTCGATAGTGTCCGAGGACTCGACTTCGAGCGTAATG 1812 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || | ||||| ||||| | |||||| Sbjct 1811 GTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 1777 >seq53 Length=94643 Score = 111 bits (122), Expect = 4e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || || || || || ||||| || ||||||||||| || | | || | Sbjct 56558 GAGGCGGAGAACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCG 56617 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| || || || |||||||| || | |||||| || | | ||| ||||| Sbjct 56618 GCCATCTTCGAGCTGCTTACCAGCGAAGATGAGTCGCTGCTGATCGGGTGGGATGCCTTC 56677 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || ||||| || |||||| | || | | |||| || ||| || || || || Sbjct 56678 CTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCAACCTCGAGGGT 56737 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| ||||| ||||| || |||| |||||| Sbjct 56738 GATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 56776 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||||||||| | || ||||| || || |||||||| |||| | || | ||||| Sbjct 56336 GAGGACAAGATGCAAGGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATC 56395 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || || || || |||||||| | ||||||||| | | || || ||||| || Sbjct 56396 TTCAAGCTGCTTGCCTGCAAAGATAAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTC 56455 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||| || ||||| | || | |||| || ||| ||||| || ||||| || Sbjct 56456 CTGAATCTTGGCCTTGACGTTGTCGATAGTGTCCGAGGACTCGACTTCGAGCGTAATGGT 56515 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || | |||||| || |||| |||||| Sbjct 56516 CTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 56548 >seq52 Length=95535 Score = 105 bits (116), Expect = 2e-17 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| || ||||| || || || || ||||||||||| || | | || | ||||| Sbjct 17637 GAGGACGAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGACCATC 17696 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || || ||||||||||| || | |||||| || | | || |||||||| || Sbjct 17697 TTCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTC 17756 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || ||||| | || | | |||| ||| ||| || || || || || || Sbjct 17757 CTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGT 17816 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || |||||||| || || || |||| |||||| || Sbjct 17817 CTTACCCGTGAGGGTTTTAACAAAGATCTGCATCTT 17852 >seq100 Length=67640 Score = 86.0 bits (94), Expect = 1e-11 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| || || || |||||||| || ||||||||||| || | | || | Sbjct 61197 GAGACGGAGGACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCG 61138 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || || ||||||||||| || | ||||||||| | | ||| || || Sbjct 61137 GCCGTCCTCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCGGGGGGGATACCCTC 61078 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || ||||| | || | | |||| ||| ||| || ||||| || Sbjct 61077 CTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGT 61018 Query 152066 AATAGTTTTGCC 152077 || || || || Sbjct 61017 GATGGTCTTACC 61006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153618844942531