Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vanrija_20humicola_20[genbank_20GCA_5F001600235.1_202016-03-01] 10 sequences; 22,653,840 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1 116 4e-21 seq5 95.1 1e-14 >seq1 Length=5192464 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||| || | ||||| || |||| || |||||||| || ||||| Sbjct 4723603 CTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAA 4723662 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||||| || | | |||||||||| ||| | || | | ||| Sbjct 4723663 GATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCC-TGAATCTTGCTCTTCACGT 4723721 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||||||||| || || |||| || || || || ||||| | ||||| | Sbjct 4723722 TGTCGATGGTGTCGCTCGACTCGACCTCGAGGGTAATAGTCTTACCCGTCAAGGTCTTGA 4723781 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 4723782 CGAAGATCTGCAT 4723794 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || |||| || |||||||| || ||||| Sbjct 4723831 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 4723890 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||||| || | || |||||||||| ||| || |||| ||| Sbjct 4723891 GATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGA-CGT 4723949 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || || || |||| ||||| || |||||||| || ||||| | Sbjct 4723950 TGTCGATCGTGTCCGAAGACTCAACCTCGAGAGTGATCGTCTTGCCCGTGAGGGTCTTGA 4724009 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 4724010 CGAAGATCTGCAT 4724022 Score = 104 bits (114), Expect = 3e-17 Identities = 132/179 (74%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 43006 TGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCT 43065 |||| || | || || || |||| || |||||||| || ||||| ||||| ||||||| Sbjct 3468015 TGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCT 3468074 Query 43066 GGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCG 43124 |||||| || | || |||||||||| ||| || |||| ||| | | | ||||| Sbjct 3468075 GGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCC 3468133 Query 43125 CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || |||| |||||||| |||||||| || ||||| || ||||| ||||| Sbjct 3468134 GAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 3468192 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || |||| || |||||||| || ||||| Sbjct 4724059 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCCAGCTGCTTGCCGGCGAA 4724118 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | || |||||||||| ||| || |||| | Sbjct 4724119 AATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATT 4724178 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| || || || || | |||||||| ||||| || || ||||| || Sbjct 4724179 GTCGATGGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCGGTAAGAGTCTTGAC 4724238 Query 43172 AAAGATTTGCAT 43183 |||||| ||||| Sbjct 4724239 AAAGATCTGCAT 4724250 Score = 102 bits (112), Expect = 9e-17 Identities = 142/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | ||| || || | || || |||||||| || || || Sbjct 4723375 CTCCTTCTGGATGTTGTAGTCGGACAGCGTACGGCCATCCTCCAGCTGCTTGCCGGCAAA 4723434 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || || ||||||||||||| || | || |||||||||| ||| | || | |||| || Sbjct 4723435 GATAAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC-TGAATCTTCGACTTGA-CG 4723492 Query 43111 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 | | | | |||||| ||| || || || | |||||||| ||||| || | ||||| Sbjct 4723493 TTGTCAATGGTGTCGGACGACTCGACCTCAAGTGTGATGGTCTTGCCGGTCAAGGTCTTG 4723552 Query 43170 ACAAAGATTTGCAT 43183 || ||||| ||||| Sbjct 4723553 ACGAAGATCTGCAT 4723566 >seq5 Length=2714734 Score = 95.1 bits (104), Expect = 1e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || |||| || |||||||| || ||||| Sbjct 1972281 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 1972340 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||||| || | || |||||||||| ||| || |||| | Sbjct 1972341 GATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 1972400 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| || || || |||| |||||||| |||||||| || ||||| || Sbjct 1972401 GTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGAC 1972460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817528522800