Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vanrija_20humicola_20[genbank_20GCA_5F001600235.1_202016-03-01] 10 sequences; 22,653,840 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq6 233 4e-56 seq1 104 5e-17 >seq6 Length=2565775 Score = 233 bits (258), Expect = 4e-56 Identities = 663/1006 (66%), Gaps = 22/1006 (2%) Strand=Plus/Minus Query 248734 ATGGTCGCCGATGACGTCCACACCGTCATTCAGGACAACGCGCACCTCCTGGACGGCGCG 248793 |||||| | || || || ||| | | | |||| |||| | | |||| ||||| || Sbjct 1607638 ATGGTCTCGGAGGAGGTGTACAACATTGTCCAGGCCAACAAGGATGTCCTCGACGGTGCC 1607579 Query 248794 ATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCG 248853 || ||||| | || || | ||| | | ||||| ||||| || || ||| ||| Sbjct 1607578 ATCATCTACGACCGTGACTTTGCCTACAACTACTTTGGCTTCAAGACCCTTGAGCGTTCG 1607519 Query 248854 TATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTG 248913 || |||||||| || | |||||| ||| || || ||||||||| | ||||| ||| Sbjct 1607518 TACCTCCTCAAGATCAACGGCAAGGTCGCCGAGCGCCCCCAGCACATGCTCATGCGTGTG 1607459 Query 248914 GCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGT 248973 || ||||| || ||| || |||| |||| || |||||||| |||| | ||| Sbjct 1607458 GCCGTCGGTATCCACGGCGACAACATTGAGAAGGTCCTCGAGACCTACAACCTCATGTCG 1607399 Query 248974 GAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAG 249033 || |||| | || || || | || || ||||||||| | |||||| | || ||| Sbjct 1607398 GAGCGCTACTTCACCCACGCGTCTCCTACCCTCTTCAACTCGGGTACCCCCCACGCCCAG 1607339 Query 249034 CTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACG 249093 || |||||||| || | |||||| | |||||||| | |||||||| || ||||| Sbjct 1607338 ATGTCGTCGTGCTTCCTCGTCGCCATGAAGGACGACTCGATTGACGGCATCTACGACACC 1607279 Query 249094 CTTAA-ACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAA 249152 || || || || | | ||| || || || || || ||||||||| | || ||| Sbjct 1607278 CTCAAGACCTGCGCCCA-GATCTCCAAGACTGCCGGTGGTATCGGTCTCCACATCCACAA 1607220 Query 249153 CATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACC 249212 ||| || || ||||| |||||||| || || || || | | || ||||| || Sbjct 1607219 CATTCGTGCCAAGGGCTCGTACATTGCCGGCACCAACGGCTACTCGAACGGCATCGTCCC 1607160 Query 249213 CCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAA 249269 | | || || | || |||| || | | | || |||||| || | || Sbjct 1607159 CATGCTCCGCGCGTACGACGCCACTGCTCGTTACGTCGACCAGGGTGGCAACAAGCGTCC 1607100 Query 249270 GGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTT 249329 || | || ||||| || | || |||||||||||| | || || ||||| ||| | Sbjct 1607099 CGGTGCCTTTGCCATCTACCTTGAGCCCTGGCACGCCGATGTGTTCGACTTCCTCGACCT 1607040 Query 249330 GAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGT 249389 || |||||| ||||||| ||| | | || |||||||||||||||| ||| ||| | Sbjct 1607039 GAGGAAGAACCACGGCAAGGAGGAGGTTCGCGCCCGTGACCTCTTCTACGCCCTCTGGAT 1606980 Query 249390 CTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTC 249449 | ||||| | |||||| || ||| || |||||||| ||||| || | | || | Sbjct 1606979 CCCCGACCTCTTCATGAAGCGTGTCGAGCAGGACGGCGAGTGGACCCTCATGTGCCCTGC 1606920 Query 249450 CGA-CGCCCCGGACCTCATCGA--TCTACACGGCGCCGACTTCGACCAAGCCTATAAGAA 249506 ||| ||||||| ||| ||| || || ||| | | ||||| | || |||| Sbjct 1606919 CGAGTGCCCCGG-CCTTGCCGACGTCCACTCGGAG--AAGTTCGAGGAGCTGTACGAGAA 1606863 Query 249507 ATACGAATCCAACGGCATCG---GCAAGACAATCAAGGCTCGGACCCT---TTTTGCGAA 249560 ||||| | |||| | ||||||| |||||||| | || || || || | Sbjct 1606862 GTACGAGCGTGAGGGCAAGGGTCGCAAGACCATCAAGGCCCAGAAGCTCTGGTTCGCTA- 1606804 Query 249561 GGTGGTGGAGTCCCAGATAGAGACAGGGGGGCCGTATTAT-TTGTTCAAAGACGCGTGCA 249619 | | ||| | |||| ||||| || || |||| | || | | ||| ||||| || Sbjct 1606803 --TCCTTGAGGCTCAGACCGAGACTGGTGGCCCGT-TCATGCTCTACAAGGACGCTGCCA 1606747 Query 249620 ACGCCAAGAGTAACCAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGCAGAGG 249679 || |||| ||||| | ||| || || |||||| || || || ||||| | ||| Sbjct 1606746 ACCGCAAGTCGAACCAGCAGCACCTCGGCACCATCAAGTCCTCCAACCTCTGCACTGAGA 1606687 Query 249680 TGATTCAATACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGC 249725 | || | ||||| || || ||| | || ||||||||||| || Sbjct 1606686 TCATCGAGTACTCTGCCCCCGATGAGGTCGCTGTCTGCAACCTCGC 1606641 >seq1 Length=5192464 Score = 104 bits (114), Expect = 5e-17 Identities = 174/252 (69%), Gaps = 21/252 (8%) Strand=Plus/Plus Query 254099 GCGCGTGCTCGAGCTGAACGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGAT 254158 ||| ||||||||||| ||||| || ||||| || || | |||||||||||| ||||| Sbjct 4021172 GCGTGTGCTCGAGCTCAACGCGTCCGACGAGCGTGGTATTAGCGTCGTCCGCGAGAAGAT 4021231 Query 254159 CAAGACTTTCTC---CAAGATGTCG----ATTTCGTCGTTCCAACC--CGGC-------- 254201 |||||| ||| | | ||| | | | || ||| | || |||| Sbjct 4021232 CAAGACGTTCGCGCGCGAGACGCCCCGCAACGCCGGCGTCTCGTCCGACGGCAAGGAGTA 4021291 Query 254202 ----TGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGC 254257 ||||| || | |||||| | || ||||| ||||| |||| ||||||| ||||| Sbjct 4021292 CCCCTGTCCCCCGTACAAGCTTATCATTCTGGATGAGGCAGACAGCATGACGCAGGACGC 4021351 Query 254258 GCAGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGT 254317 ||| ||| ||||| || | ||||||||| |||| | | |||||||| || || || Sbjct 4021352 TCAGAGCGCTCTCCGTCGTATCATGGAGACGTACTCGCGTATCACGCGTTTCTGTCTCGT 4021411 Query 254318 GTGCAACTACGT 254329 ||||||||||| Sbjct 4021412 CTGCAACTACGT 4021423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073766262423680