Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vanrija_20humicola_20[genbank_20GCA_5F001600235.1_202016-03-01] 10 sequences; 22,653,840 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1 188 1e-42 seq6 134 2e-26 seq2 93.3 6e-14 seq4 86.0 9e-12 >seq1 Length=5192464 Score = 188 bits (208), Expect = 1e-42 Identities = 426/633 (67%), Gaps = 37/633 (6%) Strand=Plus/Plus Query 125234 CTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 ||| ||||| ||||| |||||||| |||||| | ||||| || | ||||| || || Sbjct 4742363 CTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCGCTTCTCAT 4742422 Query 125294 TGACATGTACATTCGCGAT-----CCGCAACGTAAACACATGCTCTTTAACGCAATCGAC 125348 |||| |||||| ||||| |||| || || ||||| | || || ||| Sbjct 4742423 CGACACGTACATCCGCGACAACGCCCGCCGCGAGTAC-----CTCTTCCAGGCCATTGAC 4742477 Query 125349 ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAG 125408 || | || | || || ||||| | |||| | | |||||| | | |||||| Sbjct 4742478 ACCATCCCCTGCATCAAGAAGAAGGCCGACTGGGCCCTCCACTGGATC-ACG--GACAAG 4742534 Query 125409 ---TCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCG 125465 || |||| ||| || | ||| | || ||||| ||||| |||||||||||||| ||| Sbjct 4742535 CGCTCGTCGTTCGCTGAGCGTCTGATTGCTTTCGCTGCCGTCGAGGGCATCTTCTTCTCG 4742594 Query 125466 GGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCAC 125525 || ||||| ||||||| |||||||||||||| || ||||||||||| || || | Sbjct 4742595 GGCTCGTTTGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGTCTCACCTTC 4742654 Query 125526 AGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTT 125585 |||||| | || || || |||||||| || ||| ||||||||| || || || Sbjct 4742655 TCCAACGAGCTCATCTCGCGTGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTT- 4742713 Query 125586 CGCAACTATCTGCGTC-CCGAGTGCAGATC--CAGCGATGAAAAGGTCATCAACATTGTA 125642 || | | || || | ||| || | || | || ||| ||||||| Sbjct 4742714 --CACCCACCTCCGCCGCCGCCCTCACCCCGACACCATTGCCAAGATCATCAA------- 4742764 Query 125643 ACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATT 125702 || ||||| || || || ||||| || ||||| |||| || ||| | || Sbjct 4742765 --GGAGGCCGTCGCCATCGAGCAGGAGTTCCTCACCGAGGCCCTCCCCGTCTCGCTCATC 4742822 Query 125703 GGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTAC 125762 ||||||||| |||||| |||||| ||||||| |||||||| || || || || || | Sbjct 4742823 GGCATGAACGCCAAGCTCATGTGCCAGTACATTGAGTTTGTTGCCGACCGCCTGCT---C 4742879 Query 125763 GAGTTGATTGGC--CG-CAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGC 125819 | ||||| || |||| | |||||| | | || ||||| || |||||| | Sbjct 4742880 GTCGCCCTTGGCAACGACAAGCTCTACAACTCGACCAACCCCTTCGACTTCATGGAGATG 4742939 Query 125820 ATATCACTAGAGGGTAAGACCAACTTTTTCGAG 125852 || || || |||| ||| ||||||| |||||| Sbjct 4742940 ATCTCGCTCCAGGGCAAGGCCAACTTCTTCGAG 4742972 >seq6 Length=2565775 Score = 134 bits (148), Expect = 2e-26 Identities = 342/515 (66%), Gaps = 4/515 (1%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || |||||| || | | ||| | || || |||||| | |||| | || | | || Sbjct 1607188 ACCAACGGCTACTCGAACGGCATCGTCCCCATGCTCCGCGCGTACGACGCCACTGCTCGT 1607129 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 ||||| ||||| ||||| || || || || || | ||| ||||| | || || ||| Sbjct 1607128 TACGTCGACCAGGGTGGCAACAAGCGTCCCGGTGCCTTTGCCATCTACCTTGAGCCCTGG 1607069 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 ||||| || || || ||||| |||| || | || ||| ||| || |||| || Sbjct 1607068 CACGCCGATGTGTTCGACTTCCTCGACCTGAGGAAGAACCACGGCAAGGAGGAGGTTCGC 1607009 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGAC 97046 ||| | ||| | || || || |||||| | || || | ||||||||||| ||| | | Sbjct 1607008 GCCCGTGACCTCTTCTACGCCCTCTGGATCCCCGACCTCTTCATGAAGCGTGTCGAGCAG 1606949 Query 97047 GGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGC 97106 | ||| | |||| ||| |||||||| | | || ||||| || |||| | Sbjct 1606948 GACGGCGAGTGGACCCTCATGTGCCCTGCCGAGTGCCCCGGCCTTGCCGACGTCCACTCG 1606889 Query 97107 GAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGT 97165 || |||| |||| |||| | ||||||| |||||| | || |||| | | Sbjct 1606888 GAGAAGTTCGAGGAGCTGTACGAGAAGTACGAGCGTGAGGGCAAGGGTCGCAAGACCA-T 1606830 Query 97166 CGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGT 97224 | | || | |||| || ||| || ||| | ||||||| |||||||| |||| Sbjct 1606829 CAAGGC-CCAGAAGCTCTGGTTCGCTATCCTTGAGGCTCAGACCGAGACTGGTGGCCCGT 1606771 Query 97225 ACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCA 97284 ||| ||||||||||| | | || ||||| ||||| | ||| | |||||||||| Sbjct 1606770 TCATGCTCTACAAGGACGCTGCCAACCGCAAGTCGAACCAGCAGCACCTCGGCACCATCA 1606711 Query 97285 AGGGCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319 || |||||| || ||||| || || | |||||| Sbjct 1606710 AGTCCTCCAACCTCTGCACTGAGATCATCGAGTAC 1606676 Score = 89.7 bits (98), Expect = 8e-13 Identities = 124/172 (72%), Gaps = 4/172 (2%) Strand=Plus/Minus Query 98037 ATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGA 98096 |||||||||||||||||||||||| || ||| | | ||||| | ||||||||| | Sbjct 1605943 ATCTACAAGACTGTCTGGGAGATTTCGCAGAAGGCTGTCATCGACCTCGCTGCCGACCGT 1605884 Query 98097 GGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGT 98156 |||| || ||| |||||| || ||| |||| | || | ||| | ||| ||| | | Sbjct 1605883 GGTGCCTTCATCGACCAGTCGCAGTCGCTCAACATCCACCTCGCCAACCCCTCCTTC--T 1605826 Query 98157 CGTA--TGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGG 98206 || | | || ||||| ||||| |||| ||||| || |||||||| || Sbjct 1605825 CGCAGCTCACGTCGATGCACTTCTACGGCTGGAAGCGTGGTCTCAAGACTGG 1605774 >seq2 Length=3535900 Score = 93.3 bits (102), Expect = 6e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 125444 CGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGG 125503 ||| || ||||||||||| ||||| ||| || |||||||| |||||||||||||| || Sbjct 2109918 CGTCGAAGGCATCTTCTTCTCGGGCTCTTTCGCCGCCATCTTCTGGCTCAAGAAGCGTGG 2109977 Query 125504 ACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTG 125563 |||||||| || || ||| | |||||| | || || ||||||||| | ||| Sbjct 2109978 CCTCATGCCAGGGCTTACGTTCTCGAACGAGCTGATCAGCCGCGACGAGGGCATGCACAC 2110037 Query 125564 TGACTTTGC 125572 |||||||| Sbjct 2110038 CGACTTTGC 2110046 >seq4 Length=3026064 Score = 86.0 bits (94), Expect = 9e-12 Identities = 244/362 (67%), Gaps = 16/362 (4%) Strand=Plus/Minus Query 69883 GGACAACAACCTACCTCTGTTGACGACCAAGACTGTCTTTGTCAAG---GGCGTCATCGA 69939 |||||||| || || ||| ||||||| ||| || || || | ||||| ||||| Sbjct 1700815 GGACAACACGCTGCCCCTGCTGACGACGAAGCGCGTGTT---CACGCGCGGCGTGATCGA 1700759 Query 69940 GGAGCTCTTGTGGATGATTTCCGGATCGACCAATGCCAAAGAGCTGAGCCG-AAAGGGTG 69998 |||||| ||||| | | |||| | || | | ||| | ||| |||| ||||| | Sbjct 1700758 GGAGCTGCTGTGGTTCGTGGCCGGCTGCACGGACGGCAACGTGCT-CGCCGCGAAGGGCG 1700700 Query 69999 TACACATTTGGAGCGGCAACAGTAGTCG-AAGCGTT-TTGGATTCGC-TCGGCTTCACCG 70055 | ||||| ||| ||| ||| | |||| | ||| |||| ||| | ||| || | Sbjct 1700699 TGCACATCTGGGCCGGGAACGG--GTCGCGCGAGTTCCTGGA-CCGCGTTGGCCTCTCGC 1700643 Query 70056 ACAGACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCA 70115 || | | |||||||| || ||||| ||||| || ||||||||| | |||| ||| | Sbjct 1700642 ACCGCCGCGAGGGCGACCTCGGGCCGGTGTATGGCTTCCAGTGGCGCCACTTTGGCGCGG 1700583 Query 70116 AGTATGTAGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCA-ATTGCAGACAATC 70174 ||| | ||||||| ||||| |||| |||| || || || | || || || Sbjct 1700582 CGTACGGCACCTGCGAGGACGACTACGCGGGCAAGGGCGTCGACCAGCTCGCCGA-GGTC 1700524 Query 70175 ATTGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCT 70234 ||||| | |||||| ||| || || || || ||||||| || || | ||||| || Sbjct 1700523 ATTGATAAGATCAAGAACAACCCGACCGACCGGCGGATCGTGCTGAGCGCGTGGAACCCG 1700464 Query 70235 GC 70236 || Sbjct 1700463 GC 1700462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741059107367600