Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vanrija_20humicola_20[genbank_20GCA_5F001600235.1_202016-03-01] 10 sequences; 22,653,840 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1 131 2e-25 seq2 107 2e-18 >seq1 Length=5192464 Score = 131 bits (144), Expect = 2e-25 Identities = 179/248 (72%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || || || ||| ||| ||||||||||| | || || |||||||| || ||||| Sbjct 4742704 CAGGCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTGAGA 4742645 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| ||||||||||| || ||||| || ||||| || || || || || |||||| Sbjct 4742644 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAACGAGCCCGAGAAGAAG 4742585 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC--ATAACCGGCGC-TGTCATGT 33480 || || || || ||||| || ||||| || | ||| | | || |||| |||| Sbjct 4742584 ATGCCCTCGACGGCAGCGAAAGCAATCAGACGCTCAGCGAACGACGAGCGCTTGTCCGTG 4742525 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 ||||| | | ||||| ||||||||||| || | || || || || || ||||| | Sbjct 4742524 ATCCAGTGGAGGGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTGTCAATGGCCTGG 4742465 Query 33541 AAGAGATA 33548 ||||| || Sbjct 4742464 AAGAGGTA 4742457 >seq2 Length=3535900 Score = 107 bits (118), Expect = 2e-18 Identities = 120/158 (76%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||| || || || || ||| ||||| |||||||| | || || || ||||| || | Sbjct 2110057 ACAGCAGGCACGCAAAGTCGGTGTGCATGCCCTCGTCGCGGCTGATCAGCTCGTTCGAGA 2109998 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 |||| || || ||||| ||||||||||| || ||||| || |||| ||||| || || | Sbjct 2109997 ACGTAAGCCCTGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGCGGCGAAAGAGCCCG 2109938 Query 33416 AAAAGAAGATTCCTTCTACTGCA-GCAAAGGCAATAAG 33452 | |||||||| ||||| || ||| |||||||| || || Sbjct 2109937 AGAAGAAGATGCCTTCGAC-GCACGCAAAGGCGATCAG 2109901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622947122131600