Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vanrija_20humicola_20[genbank_20GCA_5F001600235.1_202016-03-01] 10 sequences; 22,653,840 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1 116 3e-21 seq5 89.7 4e-13 >seq1 Length=5192464 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || ||||| || || |||| ||||| || || | || Sbjct 4723566 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACACTTGAGGTCGAGTCGTCC 4723507 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || ||||| ||||||||||| || || ||||| || Sbjct 4723506 GACACCATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCCCCCGACCAG 4723447 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || ||||| ||||||||||| ||| | |||||| ||| || | ||||| |||||| Sbjct 4723446 CAGCGCCTTATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGTACGCTGTCCGACTACAAC 4723387 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 4723386 ATCCAGAAGGAGTCGAC 4723370 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | ||||| || || |||||||||| || || || || Sbjct 4724250 ATGCAGATCTTTGTCAAGACTCTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCC 4724191 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || || || ||||||||||| || || || || || Sbjct 4724190 GACACCATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCAG 4724131 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| ||| ||| | || || |||||| Sbjct 4724130 CAGCGCCTGATTTTCGCCGGCAAGCAGCTGGAGGACGGCCGTACCCTTTCGGACTACAAC 4724071 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 4724070 ATCCAGAAGGAGTCTAC 4724054 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || ||| ||||||| || || || | | Sbjct 4724022 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACTCTCGAGGTTGAGTCTTCG 4723963 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || || || ||||||||||| ||||| ||||| || Sbjct 4723962 GACACGATCGACAACGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 4723903 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| | ||||| ||||||| ||||||| |||||| Sbjct 4723902 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 4723843 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | || | ||| | || | ||||| ||| Sbjct 4723842 ATCCAGAAGGAGTCGACGCTCCACCTTGTTCTTCGTCTCCGCGGTGGT 4723795 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || ||||| || | || || || || || | | | Sbjct 4723794 ATGCAGATCTTCGTCAAGACCTTGACGGGTAAGACTATTACCCTCGAGGTCGAGTCGAGC 4723735 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | | || || ||||| |||||||||||||| || ||||| || Sbjct 4723734 GACACCATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATCCCCCCCGACCAG 4723675 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| | ||||| |||||| | ||||| |||||| Sbjct 4723674 CAGCGTCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTTTCCGACTACAAC 4723615 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || || || Sbjct 4723614 ATTCAGAAGGAGTCGAC 4723598 Score = 86.0 bits (94), Expect = 5e-12 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || || || || || | || || || || |||| || || || || || Sbjct 3468194 AGATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCT 3468135 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | || ||| | ||| | |||| || || || ||||||||||| || || ||||| | Sbjct 3468134 CGGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACC 3468075 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || ||||| || || |||||||| ||| | ||||| ||||||| | || || |||| Sbjct 3468074 AGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACA 3468015 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 117064 TGATCGCTTTCGCCATTGTCGAAGGCATTTTCTTTTCAGGCAGTTTTGCTGCCATATTTT 117123 |||| |||||||| ||||| ||||| ||||| || ||| ||||| |||| || | Sbjct 4742557 TGATTGCTTTCGCTGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTTGCCTCCATCTTCT 4742616 Query 117124 TTATCAAGACCAAAGGTCTAATGCCGGGTCTAACGTTTAGCAACGAATTAATATCGCGTG 117183 |||||| || || ||||| ||||| || || |||||| | || ||||||| Sbjct 4742617 GGCTCAAGAAGCGTGGCCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCGCGTG 4742676 Query 117184 ACGAAGGTTTACACACCGATTTTGCGTGC 117212 |||| ||| | |||||||| ||||| ||| Sbjct 4742677 ACGAGGGTCTCCACACCGACTTTGCCTGC 4742705 >seq5 Length=2714734 Score = 89.7 bits (98), Expect = 4e-13 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| || || || || || | || ||| | ||| || |||| Sbjct 1972448 ACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATCGACAATGTCAAGTCC 1972389 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| || || ||||| || || || || || || |||||||| Sbjct 1972388 AAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGCAAG 1972329 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 ||| | ||||| ||||||| | || || |||||||| || || || || ||| Sbjct 1972328 CAGCTCGAGGACGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAGTCGACC 1972275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727948845650