Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vanrija_20humicola_20[genbank_20GCA_5F001600235.1_202016-03-01] 10 sequences; 22,653,840 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1 109 5e-19 seq5 89.7 5e-13 >seq1 Length=5192464 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | ||| || || || | |||||| || || || |||||||| || | Sbjct 4723795 ACCACCGCGGAGACGAAGAACAAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGA 4723854 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || |||||| |||| || |||||||||||||| | ||||| |||||||||||||| || Sbjct 4723855 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGGGG 4723914 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || || || || || || || ||| || || | || || | || || Sbjct 4723915 AATGCCCTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATCGTGTCCGAAGACTCAAC 4723974 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | |||||||| || | || || ||||| || ||||| Sbjct 4723975 CTCGAGAGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 4724022 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||| || || || | ||||| || || ||||||||||| || | Sbjct 4723567 ACCACCACGCAGGCGAAGGACGAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGA 4723626 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| |||| ||||||||||||||||| | ||||| |||||||||||||| || Sbjct 4723627 AAGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGGGG 4723686 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || || || ||| || || | || || | | || || Sbjct 4723687 GATACCCTCCTTGTCCTGAATCTTGCTCTTCACGTTGTCGATGGTGTCGCTCGACTCGAC 4723746 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||| || ||||| || || ||||| || ||||| Sbjct 4723747 CTCGAGGGTAATAGTCTTACCCGTCAAGGTCTTGACGAAGATCTGCAT 4723794 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || || || || || |||||||| || | | ||| || |||| Sbjct 4724039 AGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCC 4724098 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||||||||| |||| || ||||||||||| ||||| || || || || || Sbjct 4724099 TCCAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC 4724158 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || || || || || || | ||| | |||| Sbjct 4724159 TGGATCTTCGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGAGTGATGGTC 4724218 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||| | ||| || || || || ||||| Sbjct 4724219 TTGCCGGTAAGAGTCTTGACAAAGATCTGCAT 4724250 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || || | |||||| || || || |||||||| || | | || || | || Sbjct 4723355 AGGACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTACGGCCATCC 4723414 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||||||| | || || |||||||||||||| || || || || || || Sbjct 4723415 TCCAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 4723474 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || || | || || | || || || | || | |||| Sbjct 4723475 TGAATCTTCGACTTGACGTTGTCAATGGTGTCGGACGACTCGACCTCAAGTGTGATGGTC 4723534 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||||||| || || ||||| || ||||| Sbjct 4723535 TTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 4723566 >seq5 Length=2714734 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/153 (75%), Gaps = 8/153 (5%) Strand=Plus/Minus Query 115366 GCACGGTTTTCATGTTCACGAATTCGGCGACA-CTAGCAACGGCTGCACGTCCGCCGGCG 115424 || ||| || || | ||||| ||||| |||| || | |||||||||||||||||||||| Sbjct 66375 GCGCGGCTTCCACATCCACGAGTTCGGAGACAACTCG-AACGGCTGCACGTCCGCCGGCG 66317 Query 115425 AGCATTTCAACCCGTTTAAC--CAAG-ATCACGGCGCACCGAACGCACCCGTCCGCCACG 115481 || |||||||| || |||| | ||||||| || | ||| | | |||||||| Sbjct 66316 GCCACTTCAACCC---CCACGGCAAGAACCACGGCGGCCCCACCGCCTCGGACCGCCACG 66260 Query 115482 TCGGTGATCTGGGCAACGTCGAATCTGCGGGCT 115514 ||||||| || ||||||||| | ||| |||| Sbjct 66259 TCGGTGACCTCGGCAACGTCAAGACTGACGGCT 66227 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | || || || || | ||||| || || || |||||||| || | Sbjct 1972245 ACCACCACGCAGACGGAGGACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 1972304 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| |||| || |||||||||||||| | || || |||||||||||||| || Sbjct 1972305 AAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGG 1972364 Query 64336 AATTCCTTCTTTTTCTTGTATTTT 64359 || || || || || || || || Sbjct 1972365 GATGCCCTCCTTGTCCTGGATCTT 1972388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644737544400