Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vanrija_20humicola_20[genbank_20GCA_5F001600235.1_202016-03-01] 10 sequences; 22,653,840 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1 141 9e-29 seq5 98.7 1e-15 >seq1 Length=5192464 Score = 141 bits (156), Expect = 9e-29 Identities = 298/440 (68%), Gaps = 7/440 (2%) Strand=Plus/Plus Query 52392 GCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCC 52451 || ||||| || | || ||||| ||||||||| | || || || ||| |||||| Sbjct 4742547 GCTGAGCGTCTGATTGCTTTCGCTGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTTGCC 4742606 Query 52452 GCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTG 52511 ||||||| | | || | | ||| | |||||||| || || ||| ||||||| | Sbjct 4742607 TCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGTCTCACCTTCTCCAACGAGCTC 4742666 Query 52512 ATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAG-ACGCGCGT 52570 || ||||| ||||| || || ||||| |||||||| |||||| || || || || Sbjct 4742667 ATCTCGCGTGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCACCCACCTCCGC 4742726 Query 52571 GACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGA 52630 ||| | | ||||| || | || |||||||||| || || ||||| Sbjct 4742727 CGCCGCCCTC----ACCCCGACACCATTGCCAAGATCATCAAGGAGGCCGTCGCCATCGA 4742782 Query 52631 AAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCAT 52690 ||||||| | || | || || || ||| ||| | ||||||||||| || ||| Sbjct 4742783 GCAGGAGTTCCTCACCGAGGCCCTCCCCGTCTCGCTCATCGGCATGAACGCCAAGCTCAT 4742842 Query 52691 GTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA-AAGT 52749 |||| ||||||| |||||||| || || || ||| | || | | |||| | | ||| Sbjct 4742843 GTGCCAGTACATTGAGTTTGTTGCCGACCGCCTGCTCGT-CGCCCTTGGCAACGACAAGC 4742901 Query 52750 ACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCA 52809 || |||| | ||| || || || || ||| | | || ||||| |||||||| ||| Sbjct 4742902 TCTACAACTCGACCAACCCCTTCGACTTCATGGAGATGATCTCGCTCCAGGGCAAGGCCA 4742961 Query 52810 ACTTTTTCGAGAAGCGAGTC 52829 |||| |||||| ||| ||| Sbjct 4742962 ACTTCTTCGAGTCGCGTGTC 4742981 Score = 114 bits (126), Expect = 1e-20 Identities = 145/196 (74%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||| | ||| || |||||| || || || |||| Sbjct 4723601 GACTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCG 4723660 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| |||||||| ||||| || || ||||| || ||||| ||| | || | || | Sbjct 4723661 AAGATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTC-CTGAATCTTGCTCTTCAC 4723719 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||||||| ||||||| ||||||| || | || ||||| |||| || | Sbjct 4723720 GTTG-TCGATGGTGTCGCTCGACTCGACCTCGAGGGTAATAGTCTTACCCGTCAAGGTCT 4723778 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 4723779 TGACGAAGATCTGCAT 4723794 Score = 96.9 bits (106), Expect = 3e-15 Identities = 141/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || ||||| ||||| || || || |||| | Sbjct 4723373 GACTCCTTCTGGATGTTGTAGTCGGACAGCGTACGGCCATCCTCCAGCTGCTTGCCGGCA 4723432 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || ||||| ||||| || || || || || ||||| ||| | || | || | Sbjct 4723433 AAGATAAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC-CTGAATCTTCGACTTGAC 4723491 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | |||||||| |||||| ||||| | || | || || || |||| || | Sbjct 4723492 GTTG-TCAATGGTGTCGGACGACTCGACCTCAAGTGTGATGGTCTTGCCGGTCAAGGTCT 4723550 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 4723551 TGACGAAGATCTGCAT 4723566 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | ||||| |||||| || || || |||| Sbjct 4724057 GACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCCAGCTGCTTGCCGGCG 4724116 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 | || || ||||| ||||| ||||| || || || ||||| ||| || || | | Sbjct 4724117 AAAATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACA 4724176 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||||| ||||| ||||| | || | || || || || ||||| || Sbjct 4724177 TTG-TCGATGGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCGGTAAGAGTCTT 4724235 Query 138600 TACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 4724236 GACAAAGATCTGCAT 4724250 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || ||||||||| || || |||| Sbjct 4723829 GACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCG 4723888 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| || || || || || ||||| ||| || || | Sbjct 4723889 AAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACG 4723948 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||| | ||||| ||||||| || | ||| || || || || || || Sbjct 4723949 TTGTCGATCGTGTCCGAAGACTCAACCTCGAGAGTGATCGTCTTGCCCGTGAGGGTCTTG 4724008 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 4724009 ACGAAGATCTGCAT 4724022 >seq5 Length=2714734 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 57303 CTCGACGTTGCCCAAGTCGCCGACGTGCCGCACGGCCGCGTTGGGAGCGCCGTGTTCGCT 57362 || ||||||||| | ||| |||||||| || | | ||| |||| ||||||| | | Sbjct 66237 CTTGACGTTGCCGAGGTCACCGACGTGGCGGTCCGAGGCGGTGGGGCCGCCGTGGTTCTT 66296 Query 57363 GCCGGTGGGGTTAAAGTGCTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCCGAACTC 57422 |||| |||||| ||||| |||| || |||||||||||||| | |||| |||||||| Sbjct 66297 GCCGTGGGGGTTGAAGTGGCCGCCGGCGGACGTGCAGCCGTTCGAGTTGTCTCCGAACTC 66356 Query 57423 GTGAACGTGAAATCCGTGC 57441 ||| | ||| || ||| || Sbjct 66357 GTGGATGTGGAAGCCGCGC 66375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262337967200