Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vanrija_20humicola_20[genbank_20GCA_5F001600235.1_202016-03-01] 10 sequences; 22,653,840 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq6 215 6e-51 seq1 140 4e-28 seq2 91.5 2e-13 >seq6 Length=2565775 Score = 215 bits (238), Expect = 6e-51 Identities = 686/1052 (65%), Gaps = 39/1052 (4%) Strand=Plus/Plus Query 116248 TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCG 116307 || || ||||| |||||||| || || | ||||| || | ||| || || || ||||| Sbjct 1606449 TCGGCAAGACCCTGGACACCAAGACCGACGGGGCGGTGGCGCATGTTCGAGTTGCGAGC- 1606507 Query 116308 GTCTCC---ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACC 116364 ||| ||||| || | ||||| ||| ||| | || || ||||| || ||| Sbjct 1606508 --CTCAGGAACGGGGTAGTAGTTCCTGGTGATGACCTGGTCGAGGTTCTTGGTAACGACC 1606565 Query 116365 TTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTA 116424 || ||||| | || ||||| | | | || | | ||||| | ||| | | Sbjct 1606566 TTGGTGATCTGGTGGAGCTTCTTGAAGTCGTACGAGTTGGTCTCGAAGTCGACGAAGGCA 1606625 Query 116425 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 116484 || || |||| ||||| || || || |||| | |||||| ||| |||||| || Sbjct 1606626 GGGAGAGCGAGAGACGCGAGGTTGCAGACAGCGACCTCATCGGGGGCAGAGTACTCGATG 1606685 Query 116485 ATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 116544 || || || || | || || ||| |||||||| | || || || || ||||| | Sbjct 1606686 ATCTCAGTGCAGAGGTTGGAGGACTTGATGGTGCCGAGGTGCTGCTGGTTCGACTTGCGG 1606745 Query 116545 TTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 116604 || || |||||||||||||| | || || ||||| || || | || || ||| Sbjct 1606746 TTGGCAGCGTCCTTGTAGAGCATGAACGGGCCACCAGTCTCGGTCTGAGCCTCAAGGATA 1606805 Query 116605 GCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT---CCTC---CTC 116657 || ||| | | || | | || | ||| ||| || |||| |||| ||| Sbjct 1606806 GCGAACCAGAGCTTCTGGGCCTTGA----TGGTCTTG---CGACCCTTGCCCTCACGCTC 1606858 Query 116658 GTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAG--CCTCTGAGAGCCCTGGTGCC 116715 |||||| ||| || |||| |||| || || | | | || | || || || | Sbjct 1606859 GTACTTCTCGTACAGCTCCTCGAACT--TCTCCGAGTGGACGTCGGCAAGGCCGGGGCAC 1606916 Query 116716 TTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCT 116775 | | || || | ||| | ||| | || ||| ||| || ||||||||||||||||| Sbjct 1606917 TCGGCAGGGCACATGAGGGTCCACTCGCCGTCCTGCTCGACACGCTTCATGAAGAGGTCG 1606976 Query 116776 GGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGA 116835 ||||||||||| || ||||||| || || |||| | || || | || || || Sbjct 1606977 GGGATCCAGAGGGCGTAGAAGAGGTCACGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTC 1607036 Query 116836 CGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGAC 116895 | || || | ||||| | | ||| |||||||| || || ||||| | || | | Sbjct 1607037 CTCAGGTCGAGGAAGTCGAACACATCGGCGTGCCAGGGCTCAAGGTAGATGGCAAAGGCA 1607096 Query 116896 CCCTTGCGACGA------CCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGA 116949 || | |||| ||| |||||| || || | || || |||| | |||| Sbjct 1607097 CC---GGGACGCTTGTTGCCACCCTGGTCGACGTAACGAGCAGTGGCGTCGTACGCGCGG 1607153 Query 116950 AGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAAT--ACGAGACTTGTTGG 117007 ||||| || | ||| || | || | ||| || || || ||| ||||| | | ||| Sbjct 1607154 AGCATGGGGACGATGCCGTTCGAGTAGCCGTTGGTGCCGGCAATGTACGAGCCCT--TGG 1607211 Query 117008 CTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACT 117067 | | | | ||||||||| | ||| ||||| || || ||| ||||| || ||||| Sbjct 1607212 CACGAATGTTGTGGATGTGGAGACCGATACCACCGGCAGTCTTGGAGATCTGGGCGCAGG 1607271 Query 117068 CCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGC 117127 | |||| || ||||||| || || |||||||| |||| | |||| ||||||||| Sbjct 1607272 TCTTGAGGGTGTCGTAGATGCCGTCAATCGAGTCGTCCTTCATGGCGACGAGGAAGCACG 1607331 Query 117128 TCGACATTTGTGGCCTTGGTG-TACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 117186 |||||| || ||| | || | |||| | |||||||||||| || | ||||||| |||| Sbjct 1607332 ACGACATCTG-GGCGTGGGGGGTACCCGAGTTGAAGAGGGTAGGAGACGCGTGGGTGAAG 1607390 Query 117187 ATACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATA 117246 | | ||||| | ||||||||| | ||| ||||| || ||||| ||| Sbjct 1607391 TAGCGCTCCGACATGAGGTTGTAGGTCTCGAGGACCTTCTCAATGTTGTCGCCGTGGATA 1607450 Query 117247 CCGATTGAGACCCGCATAAACATGTATTGGGG 117278 |||| | || ||||| | ||||| ||||| Sbjct 1607451 CCGACGGCCACACGCATGAGCATGTGCTGGGG 1607482 >seq1 Length=5192464 Score = 140 bits (154), Expect = 4e-28 Identities = 360/541 (67%), Gaps = 8/541 (1%) Strand=Plus/Minus Query 127225 CTTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATT 127284 |||| |||| || ||| ||| |||||||||||| | ||| || | ||| ||| | Sbjct 4742996 CTTGGAGTAGGCCGAGACACGCGACTCGAAGAAGTTGGCCTTGCCCTGGAGCGAGATCAT 4742937 Query 127285 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTG 127342 |||||| || || || ||||| | ||||| | | |||| | || || | Sbjct 4742936 CTCCATGAAGTCGAAGGGGTTGGTCGAGTTGTAGAGCTTGTCGTTGCC--AAGGGCGACG 4742879 Query 127343 AGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATG 127402 || || || || | || |||||||||||| |||| || | |||||| |||||| Sbjct 4742878 AGCAGGCGGTCGGCAACAAACTCAATGTACTGGCACATGAGCTTGGCGTTCATGCCGATG 4742819 Query 127403 AG-GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTAC 127461 || | || ||||| || || || |||| ||| ||| ||| | || || ||| | Sbjct 4742818 AGCGAGACG-GGGAGGGCCTCGGTGAGGAACTCCTGCTCGATGGCGACGGCCTCCTTGAT 4742760 Query 127462 GATGGCGTGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAGC 127521 ||| | ||| ||||| ||| | ||| | ||||||| || Sbjct 4742759 GATCTTGGCAATGGTGTCGGGGTGAGGGCGGCGGCGGAGGTGGGTGAAGAGGAGGCAGGC 4742700 Query 127522 AAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 127581 ||| || |||||||||||||||||| |||||||| || || |||||| ||||| || Sbjct 4742699 AAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTGAGACCGGG 4742640 Query 127582 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 127641 |||||| || |||||||| | |||||| || | ||| ||||| ||||||||||| || Sbjct 4742639 CATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAACGAGCCCGAGAAGAAGATGCC 4742580 Query 127642 CTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGT-ATCAAACC 127700 ||| || ||||| |||| |||||||| || || || || | |||| | || Sbjct 4742579 CTCGACGGCAGCGAAAGCAATCAGACGCTCAGCGAACGA-CGAGCGCTTGTCCGTGATCC 4742521 Query 127701 ACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGA 127760 | | | ||||| | ||||| |||| ||| || |||| ||| | || || | |||| Sbjct 4742520 AGTGGAGGGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTGTCAATGGCCTGGAAGA 4742461 Query 127761 G 127761 | Sbjct 4742460 G 4742460 Score = 89.7 bits (98), Expect = 6e-13 Identities = 272/413 (66%), Gaps = 13/413 (3%) Strand=Plus/Minus Query 12701 ACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGC 12760 ||| || || ||||| || || | ||| || ||| || | || ||||| || | Sbjct 2044844 ACGGTCGAAACGACCAGGACGCATGAGCGCAGGGTCGAGCACGTCGGGACGGTTGGTACC 2044785 Query 12761 CGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATT 12820 |||| ||| || ||| | || | | |||| || ||||||||| | || || || Sbjct 2044784 GGCGAGGACGACAATGTGCTCCTTGGTGCCGAAACCGTCCATCTCAACGAGAAGCTGGTT 2044725 Query 12821 GATGGTTTGTTCACGTTCATCATTCGCGGGCATACCACCCGCACTG----CGTTGCTTAC 12876 | ||| |||||| || || || || | || | |||| || || ||| | Sbjct 2044724 CAAGGTCGATTCACGCTCGTCGTT-GCCGCCAAAGTTGCCGCCCTTTCCACGAGCCTTTC 2044666 Query 12877 CGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATT-TTCACGGGCAACTTCA 12935 ||| ||||| |||||||| ||||| | |||||| || || ||| || | | || Sbjct 2044665 CGATAGCGTCGATTTCGTCGATGAAGATGATACAGGGAGCGTTCTTCTTGGCCGTCG-CA 2044607 Query 12936 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG 12995 || | || || || | | || ||||||||| ||||||||||| || || | || | Sbjct 2044606 AACAGGTCGCGGACACGCGAGGGACCGACACCGACAAACATCTCGACGAACTCGGAACCC 2044547 Query 12996 GA-ACATTGGAT--GAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 13052 || || ||| ||| || || |||| || || || |||| ||||||||||||| Sbjct 2044546 GAGAC---GGACAGGAACGGCACCTTGGCCTCTCCGGCAGTGGCCTTGGCGAGGAGGGTC 2044490 Query 13053 TTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC 13105 || || || || || |||| ||| | ||||||||| || ||| |||| || Sbjct 2044489 TTACCGGTACCAGGAGGACCCGAGAGGATGGCACCACGGGGAATCTTGGCGCC 2044437 >seq2 Length=3535900 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| | |||||||| ||| ||| || || |||||||| || ||| Sbjct 2110046 GCAAAGTCGGTGTGCATGCCCTCGTCGCGGCTGATCAGCTCGTTCGAGAACGTAAGCCCT 2109987 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 |||||||| || |||||||| | |||||| || || || ||||| ||||||||||| Sbjct 2109986 GGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGCGGCGAAAGAGCCCGAGAAGAAGATG 2109927 Query 127640 CCCTCCACACACGCGAACGC 127659 || || || ||||| || || Sbjct 2109926 CCTTCGACGCACGCAAAGGC 2109907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613507123311600