Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vanrija_20humicola_20[genbank_20GCA_5F001600235.1_202016-03-01] 10 sequences; 22,653,840 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq6 154 2e-32 seq2 89.7 8e-13 >seq6 Length=2565775 Score = 154 bits (170), Expect = 2e-32 Identities = 399/602 (66%), Gaps = 12/602 (2%) Strand=Plus/Plus Query 205165 CTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTC 205224 || ||| || |||||| |||||| ||| |||| || || |||||||| | || | || Sbjct 1606961 CTTCATGAAGAGGTCGGGGATCCAGAGGGCGTAGAAGAGGTCACGGGCGCGAACCTCCTC 1607020 Query 205225 GTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTA 205283 | || ||||||| ||| ||| || ||| || | | ||||||||||| ||||| | Sbjct 1607021 CTTGCCGTGGTTCTTCCTCAGGTCGAGG-AAGTCGAACACATCGGCGTGCCAGGGCTCAA 1607079 Query 205284 ACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCG 205343 | | ||| | || || || | |||||| ||||||||||| || |||| | | Sbjct 1607080 GGTAGATGGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTAACGAGCAGTGG 1607139 Query 205344 CGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGG 205403 ||| | | | || ||||| || || | ||||| | | ||||| |||| | ||| Sbjct 1607140 CGTCGTACGCGCGGAGCATGGGGACGATGCCGTTCGAGTAGCCGTTGGTGCCGGCAATGT 1607199 Query 205404 CCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGA 205463 |||||| | || | | |||| |||| || || || || | | ||||| || Sbjct 1607200 ACGAGCCCTTGGCACGAATGTTGTGGATGTGGAGACCGATACCACCGGCAGTCTTGGAGA 1607259 Query 205464 TCTGGGCGCA-CTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTC 205522 |||||||||| ||||| || ||| ||||||||| | || || |||||| || | Sbjct 1607260 TCTGGGCGCAGGTCTTG-AGGGTGTCGTAGATGCCGTCAATCGAGTCGTCCTTCATGGCG 1607318 Query 205523 ACCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTG 205582 || || ||||||| | || || ||| | ||| |||| || |||||| || || Sbjct 1607319 ACGAGGAAGCACGACGACATCTGGGCGTGGGGGGTACCCGAGTTGAAGAGGGTAGGAGAC 1607378 Query 205583 GCGTGGCTGAAGCGCTTCTCGCTCAAACA----CCTGTAGGTCTCCAGCACGCTCTCCAG 205638 |||||| ||||| | ||||| ||| |||||||||| || || |||| | Sbjct 1607379 GCGTGGGTGAAG----TAGCGCTCCGACATGAGGTTGTAGGTCTCGAGGACCTTCTCAAT 1607434 Query 205639 ATCGAAGCCGTGAATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCAC 205698 | | |||||| ||||| | ||| | | ||||| | ||| || || | ||| || Sbjct 1607435 GTTGTCGCCGTGGATACCGACGGCCACACGCATGAGCATGTGCTGGGGGCGCTCGGCGAC 1607494 Query 205699 CCTCTCGTTCACCTTGAGCAGATAGGCTCTCTCTAGGGTGCGGATGGCAAAAAAGTTGAA 205758 | | |||| | |||||| || || | | ||| ||||| || | |||| ||||| | Sbjct 1607495 CTTGCCGTTGATCTTGAGGAGGTACGAACGCTCAAGGGTCTTGAAGCCAAAGTAGTTGTA 1607554 Query 205759 GG 205760 || Sbjct 1607555 GG 1607556 Score = 100 bits (110), Expect = 5e-16 Identities = 315/483 (65%), Gaps = 4/483 (1%) Strand=Plus/Plus Query 203849 GTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTCTTTAGG 203908 |||||||| |||||||| | ||||| | | | | || ||||| || ||||| || Sbjct 1605726 GTGAACTGGATGGCGTTGGCTGCAGGACGGGTGCGGAGGTAGTAGGCACCAGTCTTGAGA 1605785 Query 203909 CCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATG 203968 || || ||| ||||| | |||||| || | || | | | ||||| ||| | | Sbjct 1605786 CCACGCTTCCAGCCGTAGAAGTGCATCGACGTGAGCTGCGAGAAGGAGGGGTTGGCGAGG 1605845 Query 203969 TGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGAT 204027 || ||||| || ||||| ||||||||| ||||| || || || || || | | ||| Sbjct 1605846 TGGATGTTGAGCGACTGCGACTGGTCGATG-AAGGCACCACGGTCGGCAGCGAGGTCGAT 1605904 Query 204028 AATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGTTGAGGCAC 204087 | | |||||||||||||||||| || |||||| | | | | || || | ||| | Sbjct 1605905 GACAGCCTTCTGCGAAATCTCCCAGACAGTCTTGTAGATGGCCTTGAGGTCATCAGGAAT 1605964 Query 204088 ATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTCTCCTCCC 204146 | | | || || ||| || || ||| || | || || | | || Sbjct 1605965 GT-TGGGGATGTGCTGGATGGAACCACCCGAGGCGATGATGAGGTTCTTCATGTTGTCGT 1606023 Query 204147 CCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGTCTC 204206 |||| ||||| | |||| || || || | || |||| |||||| | ||||||| Sbjct 1606024 CCCAGATGCCAAGGTTGATGAGGTCGCGGAGGAGCCAGGGGCAGATGATGGGGAAGTCTC 1606083 Query 204207 CGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGTTGC 204266 | || || || | || | | | || | |||| | || || || |||||| || Sbjct 1606084 CCGAGAGGACACGACGCGAGTAGAGCATCGAGGTGTAGGGCTCAAAGCACTCGTTCCAGC 1606143 Query 204267 CGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCACAC 204326 ||| ||||| | ||| ||| ||||||||||| || | || || |||||||| |||| Sbjct 1606144 CGAGGATCTGCGAGGTCGAGGCAGTGGGCATGGGGGCAACCAGAAGCGAGTTGCGGACAC 1606203 Query 204327 CGT 204329 ||| Sbjct 1606204 CGT 1606206 >seq2 Length=3535900 Score = 89.7 bits (98), Expect = 8e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 159915 ACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACA 159974 |||| ||||||||||||||| ||||| |||||||| || ||| | |||||| || | Sbjct 2110057 ACAGCAGGCACGCAAAGTCGGTGTGCATGCCCTCGTCGCGGCTGATCAGCTCGTTCGAGA 2109998 Query 159975 TGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGC 160034 | || || ||||||| |||||| |||||||| || ||||| || |||| || Sbjct 2109997 ACGTAAGCCCTGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGCGGCGAAAGAGCCCG 2109938 Query 160035 TAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCC 160073 || ||||| || || ||| |||||| || | |||| Sbjct 2109937 AGAAGAAGATGCCTTCGACGCACGCAAAGGCGATCAGCC 2109899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795155100605600