Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vanrija_20humicola_20[genbank_20GCA_5F001600235.1_202016-03-01] 10 sequences; 22,653,840 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1 107 2e-18 seq5 84.2 2e-11 >seq1 Length=5192464 Score = 107 bits (118), Expect = 2e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 27050 CGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 ||| || || || || || ||||||||| | | |||| |||| |||||||| || || Sbjct 4723825 CGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCC 4723884 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| | ||||||||||| || || || || | ||||| || || ||||||| | || Sbjct 4723885 GGCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTT 4723944 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | | || | ||||| | | ||||| || ||||| || | |||||||| || || Sbjct 4723945 GACGTTGTCGATCGTGTCCGAAGACTCAACCTCGAGAGTGATCGTCTTGCCCGTGAGGGT 4724004 Query 27230 TTTCACAAAGATTTGCATA 27248 || || ||||| |||||| Sbjct 4724005 CTTGACGAAGATCTGCATA 4724023 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || ||||| ||||||||| | |||| |||| || ||||| || ||| Sbjct 4723598 GTCGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCAAGCTGCTTGCCG 4723657 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || || || || | |||||| || || |||||| | ||| Sbjct 4723658 GCGAAGATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGAATCTTGCTCTTC 4723717 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || || || |||| || ||||||| || Sbjct 4723718 ACGTTGTCGATGGTGTCGCTCGACTCGACCTCGAGGGTAATAGTCTTACCCGTCAAGGTC 4723777 Query 27231 TTCACAAAGATTTGCATA 27248 || || ||||| |||||| Sbjct 4723778 TTGACGAAGATCTGCATA 4723795 Score = 82.4 bits (90), Expect = 6e-11 Identities = 116/163 (71%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 27085 TGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACAC 27144 |||| |||| |||||||| || |||||| | ||||||||||| || || || || | | Sbjct 3468030 TGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGGGGGATGC 3468089 Query 27145 CCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTA 27204 |||| || || ||||||| || | | | || | ||||| | || || || || | Sbjct 3468090 CCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGA 3468149 Query 27205 GAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || | |||||||| || || || || ||||| ||||| Sbjct 3468150 GGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 3468192 >seq5 Length=2714734 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 96896 CGGGTTTCATGTACACGAGTTTGGCGACACGAGCAACGGCTGCACTTCGGCCGGCGAACA 96955 ||| || || | |||||||| || |||| ||||||||||| || ||||||| || Sbjct 66372 CGGCTTCCACATCCACGAGTTCGGAGACAACTCGAACGGCTGCACGTCCGCCGGCGGCCA 66313 Query 96956 TTTCAACCCTACATTGCAA-AATCACGGCGCACCCAGCGCCATTGAACGCCACGTTGGTG 97014 |||||||| || |||| || ||||||| |||| |||| || |||||||| |||| Sbjct 66312 CTTCAACCC-CCACGGCAAGAACCACGGCGGCCCCACCGCCTCGGACCGCCACGTCGGTG 66254 Query 97015 ATCTGGGCAACGT 97027 | || |||||||| Sbjct 66253 ACCTCGGCAACGT 66241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424934348211120