Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vanrija_20humicola_20[genbank_20GCA_5F001600235.1_202016-03-01] 10 sequences; 22,653,840 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1 147 3e-30 seq2 102 1e-16 >seq1 Length=5192464 Score = 147 bits (162), Expect = 3e-30 Identities = 277/402 (69%), Gaps = 4/402 (1%) Strand=Plus/Minus Query 129858 ACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG-GTTACATGGGAGCGCG 129916 |||||||||||| |||| || || |||||| |||||||| | || ||||| || Sbjct 4742859 ACTCAATGTACTGGCACATGAGCTTGGCGTTCATGCCGATGAGCGAGACG-GGGAGGGCC 4742801 Query 129917 TCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTGAATGGTCTCC 129976 || || |||| ||| ||| ||| | || || ||| | ||| | |||||| || Sbjct 4742800 TCGGTGAGGAACTCCTGCTCGATGGCGACGGCCTCCTTGATGATCTTGGCAATGGTGTCG 4742741 Query 129977 GTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTCCTGGTGGAGACCC 130036 | | ||| | ||| | ||||||| |||||| || |||||||||| Sbjct 4742740 GGGTGAGGGCGGCGGCGGAGGTGGGTGAAGAGGAGGCAGGCAAAGTCGGTGTGGAGACCC 4742681 Query 130037 TCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTC 130096 |||||||| |||||||| || || |||||| ||||| |||||||| || |||||||| Sbjct 4742680 TCGTCACGCGAGATGAGCTCGTTGGAGAAGGTGAGACCGGGCATGAGGCCACGCTTCTTG 4742621 Query 130097 AACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCA 130156 | |||||| || | ||| ||||| ||||||||||| ||||| || ||||| ||| Sbjct 4742620 AGCCAGAAGATGGAGGCAAACGAGCCCGAGAAGAAGATGCCCTCGACGGCAGCGAAAGCA 4742561 Query 130157 AAGAGACGCTCAGCAAAGGAGCGGGACTTTGT-ATCAAACCACTTCATCGCCCACTGCGC 130215 | ||||||||||| || || || | |||| | ||| | | ||||| | || Sbjct 4742560 ATCAGACGCTCAGCGAACGA-CGAGCGCTTGTCCGTGATCCAGTGGAGGGCCCAGTCGGC 4742502 Query 130216 CTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG 130257 ||| |||| ||| || |||| ||| | || || | ||||| Sbjct 4742501 CTTCTTCTTGATGCAGGGGATGGTGTCAATGGCCTGGAAGAG 4742460 >seq2 Length=3535900 Score = 102 bits (112), Expect = 1e-16 Identities = 195/281 (69%), Gaps = 10/281 (4%) Strand=Plus/Minus Query 129880 CTCGGAGTTCATACCGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAAT 129939 ||| ||||| ||||| || | | || || ||||| || | |||| ||||||| || Sbjct 2110182 CTCCGAGTTGATACCTATCAAGCGGCAAGGCAGCGCATCGGTCAGGAACTCCTTCTCGAT 2110123 Query 129940 GTCCACAGCTTCCCGCACGATGGCGTGAAT---GGTCTCCGTGCCAGGTCTATTGCGCAA 129996 | |||| || || ||||| || ||||| | || || || || || | |||| | Sbjct 2110122 GGCCACTGCCTCGCGCACAATTGCGTGCACCTCGGCCTGCGAGC-AGCGGTGTTGC---A 2110067 Query 129997 AGT-CTTGAAGAGTTC-CACGGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGT 130054 || || | | || |||| |||| || ||| | |||||||| ||| ||| || Sbjct 2110066 GGTGCTGGTACAGCAGGCACG-CAAAGTCGGTGTGCATGCCCTCGTCGCGGCTGATCAGC 2110008 Query 130055 TCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAA 130114 || |||||||| || ||||||||||| || |||||||| | |||||| || || Sbjct 2110007 TCGTTCGAGAACGTAAGCCCTGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGCGGCG 2109948 Query 130115 AATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGC 130155 || ||||| ||||||||||| || || || ||||| || || Sbjct 2109947 AAAGAGCCCGAGAAGAAGATGCCTTCGACGCACGCAAAGGC 2109907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618435122695600