Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vanrija_20humicola_20[genbank_20GCA_5F001600235.1_202016-03-01] 10 sequences; 22,653,840 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 9e-16 >seq1 Length=5192464 Score = 98.7 bits (108), Expect = 9e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || |||| ||| || || |||| |||||||| ||||| || || Sbjct 4723603 CTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAA 4723662 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || |||||||||||||||| ||| | | ||| |||||| ||| | | | | ||| Sbjct 4723663 GATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCC-TGAATCTTGCTCTTCACGT 4723721 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | || ||||||||||| || || | || ||| | || ||||||| || || | Sbjct 4723722 TGTCGATGGTGTCGCTCGACTCGACCTCGAGGGTAATAGTCTTACCCGTCAAGGTCTTGA 4723781 Query 39272 CAAAGATTTGCAT 39284 | ||||| ||||| Sbjct 4723782 CGAAGATCTGCAT 4723794 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| || ||||| ||| || || || || || |||| || || || | || || Sbjct 4723358 ACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTACGGCCATCCTCC 4723417 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||| ||||| ||||| ||||||||||||| ||| | || ||| |||||| Sbjct 4723418 AGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGA 4723477 Query 39196 ATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 || ||| |||| ||| | | | || ||| |||||| || || | ||||| | || Sbjct 4723478 ATCTTCGACTTGA-CGTTGTCAATGGTGTCGGACGACTCGACCTCAAGTGTGATGGTCTT 4723536 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| || || || ||||| ||||| Sbjct 4723537 GCCGGTCAAGGTCTTGACGAAGATCTGCAT 4723566 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || ||||| ||| || || || || || |||| || || || |||| || ||||| Sbjct 4723820 TGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGC 4723879 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| || || || |||||||||||||||| ||| | || ||| |||||| ||| || Sbjct 4723880 TTGCCGGCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTG 4723939 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| ||| | | | ||| || ||||| || || | ||||| | || ||||| Sbjct 4723940 CTCTTGA-CGTTGTCGATCGTGTCCGAAGACTCAACCTCGAGAGTGATCGTCTTGCCCGT 4723998 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 || || || || ||||| ||||| Sbjct 4723999 GAGGGTCTTGACGAAGATCTGCAT 4724022 Score = 82.4 bits (90), Expect = 7e-11 Identities = 127/179 (71%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 39109 TAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGG 39168 || || | ||| || || |||| || ||||| ||||| || || || |||||||||||| Sbjct 3468017 TAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGG 3468076 Query 39169 TCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCT 39227 |||| ||| | || ||| |||||| ||| || |||| ||| | | | || || Sbjct 3468077 TCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCCGA 3468135 Query 39228 CGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 ||||| || || | ||||| | || ||||| || || || || ||||| ||||||| Sbjct 3468136 GGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATCT 3468194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429545547649130