Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vanrija_20humicola_20[genbank_20GCA_5F001600235.1_202016-03-01] 10 sequences; 22,653,840 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1 107 1e-18 >seq1 Length=5192464 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || |||||||||||||| ||||| || || Sbjct 4724022 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACTCTCGAGGTTGAGTCTTCG 4723963 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || || | || || || || Sbjct 4723962 GACACGATCGACAACGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 4723903 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || |||||||| || || || |||| ||||| | ||| |||||| Sbjct 4723902 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 4723843 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 4723842 ATCCAGAAGGAGTCGAC 4723826 Score = 84.2 bits (92), Expect = 1e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || ||||| ||||| || || ||| || Sbjct 3468192 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCG 3468133 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || || | || || || || Sbjct 3468132 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 3468073 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCAC 23774 |||||| | || || |||||||| || || || |||| ||||| Sbjct 3468072 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCAC 3468029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009558805080