Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vanrija_20humicola_20[genbank_20GCA_5F001600235.1_202016-03-01] 10 sequences; 22,653,840 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1 143 6e-29 seq5 140 8e-28 >seq1 Length=5192464 Score = 143 bits (158), Expect = 6e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || |||||||| |||||||| || || ||| Sbjct 4724019 CAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACTCTCGAGGTTGAGTCTTCGGAC 4723960 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| |||||||| || || || || || |||||||| Sbjct 4723959 ACGATCGACAACGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAG 4723900 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| || || | || || |||| || ||| || Sbjct 4723899 CGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATC 4723840 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || || || |||||| Sbjct 4723839 CAGAAGGAGTCGACGCTCCACCTTGTT 4723813 Score = 136 bits (150), Expect = 1e-26 Identities = 134/173 (77%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||||||||| || ||| ||| Sbjct 3468189 CAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGAC 3468130 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 3468129 ACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAG 3468070 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096 || || ||||||||||| || |||||||| || || | || ||| | || || Sbjct 3468069 CGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTA 3468017 Score = 131 bits (144), Expect = 4e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||||| || || || || ||||| || ||||| || ||| ||| Sbjct 4724247 CAGATCTTTGTCAAGACTCTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCCGAC 4724188 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| || || |||||||| |||||||| Sbjct 4724187 ACCATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCAGCAG 4724128 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || |||||||| || ||||| || || || | || ||| | || || ||| || Sbjct 4724127 CGCCTGATTTTCGCCGGCAAGCAGCTGGAGGACGGCCGTACCCTTTCGGACTACAACATC 4724068 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || || || || ||| Sbjct 4724067 CAGAAGGAGTCTACTCTTCACCTGGTT 4724041 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || || || || ||||| || ||||| || || ||| Sbjct 4723563 CAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACACTTGAGGTCGAGTCGTCCGAC 4723504 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| |||||||||||||| || || ||||| || |||||||| Sbjct 4723503 ACCATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCCCCCGACCAGCAG 4723444 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| ||||| || ||||| || ||||| | || || |||| || ||| || Sbjct 4723443 CGCCTTATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGTACGCTGTCCGACTACAACATC 4723384 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 4723383 CAGAAGGAGTCGACGCTCCACCTGGT 4723358 Score = 125 bits (138), Expect = 2e-23 Identities = 154/209 (74%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || || ||||| || || | || || || || || ||||||||||| || ||| Sbjct 4723791 CAGATCTTCGTCAAGACCTTGACGGGTAAGACTATTACCCTCGAGGTCGAGTCGAGC--- 4723735 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||||||||| ||||| || |||||||||||||| || || ||||| || |||||| Sbjct 4723734 GACACCATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATCCCCCCCGACCAG 4723675 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || ||||||||||| || ||||| || || || | |||||| |||| || ||| Sbjct 4723674 CAGCGTCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTTTCCGACTACAAC 4723615 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || || || || || || || || || Sbjct 4723614 ATTCAGAAGGAGTCGACTCTCCACCTCGT 4723586 Score = 116 bits (128), Expect = 9e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 ||||| || || || || ||||||||||| || ||| |||||||| || |||||||| Sbjct 4724507 CTCACCGGCAAGACCATTACCCTCGAGGTCGAGTCCTCGGACACCATTGACAACGTCAAG 4724448 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| |||||||| || || |||||||| |||||||| || || |||||||| || Sbjct 4724447 TCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGTCTCATCTTCGCTGGC 4724388 Query 178062 AAACAGCTCGAAGATGG 178078 || |||||||| || || Sbjct 4724387 AAGCAGCTCGAGGACGG 4724371 >seq5 Length=2714734 Score = 140 bits (154), Expect = 8e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992 || || || ||||| || || || |||||||||||||| || ||| ||||||||||| Sbjct 1972460 GTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATCGAC 1972401 Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052 || ||||| ||||| |||||||| || || ||||| || |||||||| || || ||| Sbjct 1972400 AATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATC 1972341 Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112 |||||||| || |||||||| || || | || ||| | || || ||| |||| || || Sbjct 1972340 TTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAG 1972281 Query 178113 TCAACACTGCATCTTGT 178129 || || || || || || Sbjct 1972280 TCGACCCTCCACCTGGT 1972264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203731045771940