Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xanthophyllomyces_20dendrorhous_20[genbank_20GCA_5F001007165.2_20201 5-05-09] 266 sequences; 19,519,467 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq144 120 3e-22 seq60 109 6e-19 seq83 95.1 1e-14 seq248 87.8 2e-12 >seq144 Length=33835 Score = 120 bits (132), Expect = 3e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 117027 CCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTT 117086 |||| | |||||| ||||| |||||||| ||||| ||||| |||||||||| || | Sbjct 14077 CCTTTGCCGAGCGACTGGTCGCCTTCGCTGCCGTTGAGGGTATCTTCTTTTCTGGATCGT 14136 Query 117087 TCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACG 117146 ||||| | || || ||||||||||| || || |||||||| || |||| || || | Sbjct 14137 TCGCCTCGATCTTCTGGCTCAAGAAGCGAGGACTCATGCCTGGATTGACGTTTTCGAATG 14196 Query 117147 AGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACT 117182 || | ||||| |||||||||||||| || ||||| Sbjct 14197 AGTTGATCTCGAGGGACGAGGGTCTTCACACCGACT 14232 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 116736 AGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACG 116795 |||| || || ||| ||||| ||||||| ||| ||| || || |||| |||| Sbjct 13610 AGCGACACTTTATCTCTCACGTCTTGGCCTTCTTCAGTAGCAGTGATGGAGTCGTGAACG 13669 Query 116796 AGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACG 116855 |||||||| ||||||| ||| | ||||| || ||| |||||||| || ||||| |||| Sbjct 13670 AGAATCTGCTCGAGCGATTCTCCCAGGAAGTACAGTCTGCCGAGGCCCGATGCTTTTACG 13729 Query 116856 GCTTTCAGATC 116866 | || |||||| Sbjct 13730 GATTCCAGATC 13740 >seq60 Length=747880 Score = 109 bits (120), Expect = 6e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40696 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGC 40755 || |||||||| || |||||||| || ||||||||| | || || || | | |||| | Sbjct 85871 ATCTTCGTAAAGACCCTCACGGGTAAGACCATCACCCTTGAGGTGGAGTCTTCTGACACC 85812 Query 40756 GTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACG 40814 | | |||| |||||| || || | ||||| || || || ||| | || ||||| || Sbjct 85811 ATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCTGATCAGCAGCG 85753 Query 40815 ACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA 40874 ||| |||| ||| || || ||||| || || | || ||||| || ||||||||||| Sbjct 85752 ACTTATCTTCGCCGGTAAGCAGCTCGAGGATGGCCGAACCCTTTCGGATTACAACATCCA 85693 Query 40875 GAAGGAGGCCACGCTGCATCTAGT 40898 ||| ||| |||| || || || || Sbjct 85692 GAAAGAGTCCACCCTCCACCTCGT 85669 >seq83 Length=2340728 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 || ||||| || |||||||| |||| || || | |||| | | | |||| |||| Sbjct 220891 CTTACGGGAAAGACCATCACTCTCGAGGTTGAGTCATCCGATACTATCGACAACG-TCAA 220833 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 || || || | || || ||||| ||||| | || ||||| ||| | |||| ||| || Sbjct 220832 GGCCAAGATCCAGGATAAGGAGGGTATCCCTCCTGATCAGCAGCGATTGATCTTCGCCGG 220773 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCT 40889 || ||||| || |||| || ||||| ||||||||||||||||||||| | || || Sbjct 220772 AAAGCAGCTTGAGGACGGACGAACCCTGTCGGACTACAACATCCAGAAGGAGTCTACCCT 220713 Query 40890 GCATCTAGT 40898 ||||| || Sbjct 220712 TCATCTCGT 220704 Score = 84.2 bits (92), Expect = 2e-11 Identities = 122/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 || ||||| || |||||||| |||| || || | |||| | | | |||| |||| Sbjct 221258 CTTACGGGAAAGACCATCACTCTCGAGGTTGAGTCATCCGATACTATCGACAACG-TCAA 221200 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 || || || | || || ||||| ||||| | || ||||| ||| | |||| ||| || Sbjct 221199 GGCCAAGATCCAGGATAAGGAGGGTATCCCTCCTGATCAGCAGCGATTGATCTTCGCCGG 221140 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 || ||||| || |||| || ||||| ||||||||||||||||||| Sbjct 221139 AAAGCAGCTTGAGGACGGACGAACCCTGTCGGACTACAACATCCAGAAGG 221090 Score = 84.2 bits (92), Expect = 2e-11 Identities = 122/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 || ||||| || |||||||| |||| || || | |||| | | | |||| |||| Sbjct 221622 CTTACGGGAAAGACCATCACTCTCGAGGTTGAGTCATCCGATACTATCGACAACG-TCAA 221564 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 || || || | || || ||||| ||||| | || ||||| ||| | |||| ||| || Sbjct 221563 GGCCAAGATCCAGGATAAGGAGGGTATCCCTCCTGATCAGCAGCGATTGATCTTCGCCGG 221504 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 || ||||| || |||| || ||||| ||||||||||||||||||| Sbjct 221503 AAAGCAGCTTGAGGACGGACGAACCCTGTCGGACTACAACATCCAGAAGG 221454 >seq248 Length=2255592 Score = 87.8 bits (96), Expect = 2e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 40777 ATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAG 40836 |||| ||||| ||||| || ||| | || ||||| |||||||||| ||| || || ||| Sbjct 645948 ATTCAGGACAAGGAGGGAATTCCCCCTGATCAGCAGCGACTCATCTTCGCCGGAAAGCAG 646007 Query 40837 CTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 || || |||| || ||||| ||||||||||||||||||| Sbjct 646008 CTTGAGGACGGACGAACCCTTTCGGACTACAACATCCAGAAGG 646050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217486896160