Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xanthophyllomyces_20dendrorhous_20[genbank_20GCA_5F001007165.2_20201 5-05-09] 266 sequences; 19,519,467 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq144 107 3e-18 seq261 93.3 6e-14 >seq144 Length=33835 Score = 107 bits (118), Expect = 3e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 125418 GCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCG 125477 ||||| ||||||| || ||||| ||||| ||||| ||||||||||| || || || Sbjct 14082 GCCGAGCGACTGGTCGCCTTCGCTGCCGTTGAGGGTATCTTCTTTTCTGGATCGTTCGCC 14141 Query 125478 GCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTT 125537 | ||||| |||||||||||||| ||||||||||| ||| ||||| || ||||| Sbjct 14142 TCGATCTTCTGGCTCAAGAAGCGAGGACTCATGCCTGGATTGACGTTTTCGAATGAGTTG 14201 Query 125538 ATATCTCGAGACGAGGGCCTACAC 125561 || || | |||||||| || ||| Sbjct 14202 ATCTCGAGGGACGAGGGTCTTCAC 14225 >seq261 Length=1720327 Score = 93.3 bits (102), Expect = 6e-14 Identities = 130/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 70063 AGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGT 70122 |||||||||||| || || || ||||| ||||| ||| | |||| || | | ||||| Sbjct 1407980 AGAGGGCGATCTCGGTCCCGTCTACGGCTTCCAATGGCGTCACTTTGGAGCAGAATATGT 1407921 Query 70123 AGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATT-GCAGACAATCATTGACA 70181 || ||| |||| |||||| ||| | ||||| || ||||| || ||| ||| |||| Sbjct 1407920 CGATTGCAAGACCGACTATCGCGGTAAAGGTGTCGACCAATTGGCCGAC-TGCATAGACA 1407862 Query 70182 CTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATT 70241 |||||| |||||| || |||||||| ||| | | | | ||||| || |||| || Sbjct 1407861 AGATCAAGAACAATCCTACGGATAGGAGAATCATCCTCTCAGCCTGGAACCCAGCAGGTT 1407802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741056735978160