Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xanthophyllomyces_20dendrorhous_20[genbank_20GCA_5F001007165.2_20201 5-05-09] 266 sequences; 19,519,467 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq165 100 4e-17 seq119 100 4e-17 seq58 95.1 2e-15 seq175 93.3 7e-15 seq73 86.0 1e-12 >seq165 Length=1046831 Score = 100 bits (110), Expect = 4e-17 Identities = 113/149 (76%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || || | |||| |||||||| |||||||| || ||||||||||| || || Sbjct 898323 GCCAAGCGACACCGAAAGATC-CTTCGAGACAACATCCAGGGTATCACCAAGCCTGCCAT 898381 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || || || || |||||||||||||| |||| || | |||| || |||| Sbjct 898382 CCGACGACTTGCGCGACGAGGTGGAGTCAAGCGAATCTCCGGTCTCATCTACGAGGAGAC 898441 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGA 16580 || | ||| | ||| | |||||| ||| Sbjct 898442 CCGAGGTGTCCTCAAGCTGTTCCTCGAGA 898470 Score = 100 bits (110), Expect = 4e-17 Identities = 113/149 (76%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || || | |||| |||||||| |||||||| || ||||||||||| || || Sbjct 936958 GCCAAGCGACACCGAAAGATC-CTTCGAGACAACATCCAGGGTATCACCAAGCCTGCCAT 936900 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || || || || |||||||||||||| |||| || | |||| || |||| Sbjct 936899 CCGACGACTTGCGCGACGAGGTGGAGTCAAGCGAATCTCCGGTCTCATCTACGAGGAGAC 936840 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGA 16580 || | ||| | ||| | |||||| ||| Sbjct 936839 CCGAGGTGTCCTCAAGCTGTTCCTCGAGA 936811 >seq119 Length=1808 Score = 100 bits (110), Expect = 4e-17 Identities = 113/149 (76%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || || | |||| |||||||| |||||||| || ||||||||||| || || Sbjct 1441 GCCAAGCGACACCGAAAGATC-CTTCGAGACAACATCCAGGGTATCACCAAGCCTGCCAT 1499 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || || || || |||||||||||||| |||| || | |||| || |||| Sbjct 1500 CCGACGACTTGCGCGACGAGGTGGAGTCAAGCGAATCTCCGGTCTCATCTACGAGGAGAC 1559 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGA 16580 || | ||| | ||| | |||||| ||| Sbjct 1560 CCGAGGTGTCCTCAAGCTGTTCCTCGAGA 1588 >seq58 Length=2575514 Score = 95.1 bits (104), Expect = 2e-15 Identities = 112/149 (75%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || || | |||| ||||||||||| ||||| || ||||||||||| || || Sbjct 2541665 GCCAAGCGACACCGAAAGATC-CTTCGAGATAATATCCAGGGTATCACCAAGCCTGCCAT 2541607 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || || || || |||||||||||||| | || || | | || || |||| Sbjct 2541606 CCGACGACTTGCGCGACGAGGTGGAGTCAAGCGAATTTCCGGCCTTATTTACGAGGAGAC 2541547 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGA 16580 || | |||| | ||| | |||||| ||| Sbjct 2541546 CCGAGGTGTTCTCAAGCTGTTCCTCGAGA 2541518 Score = 93.3 bits (102), Expect = 7e-15 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| |||| || || || |||||||| || ||||||||||| || | Sbjct 2307655 CGCCAAGCGACACCGCAAGATC-CTCCGTGACAACATCCAGGGGATCACCAAGCCGGCGA 2307713 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || || || || || || ||||||||||| ||||||| | |||| || |||| Sbjct 2307714 TCCGACGACTTGCCCGACGAGGAGGAGTCAAGCGGATCTCTGGGCTCATCTACGAGGAGA 2307773 Query 16551 TTCGTGATGTTTTGAAGATCTTCCT 16575 || | ||| | ||| | ||||| Sbjct 2307774 CCCGGGGTGTGCTCAAGCTGTTCCT 2307798 >seq175 Length=588 Score = 93.3 bits (102), Expect = 7e-15 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| |||| || || || |||||||| || ||||||||||| || | Sbjct 439 CGCCAAGCGACACCGCAAGATC-CTCCGTGACAACATCCAGGGGATCACCAAGCCGGCGA 381 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || || || || || || ||||||||||| ||||||| | |||| || |||| Sbjct 380 TCCGACGACTTGCCCGACGAGGAGGAGTCAAGCGGATCTCTGGGCTCATCTACGAGGAGA 321 Query 16551 TTCGTGATGTTTTGAAGATCTTCCT 16575 || | ||| | ||| | ||||| Sbjct 320 CCCGGGGTGTGCTCAAGCTGTTCCT 296 >seq73 Length=2505705 Score = 86.0 bits (94), Expect = 1e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || || | ||| |||||||||||||||||| || || || ||||| || || Sbjct 240963 GCCAAGCGACACCGAAAGAT-TCTTCGAGATAACATCCAGGGTATTACTAAGCCTGCCAT 241021 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || || || || |||||||||||||| | || || | |||| || |||| Sbjct 241022 CCGACGACTTGCGCGACGAGGTGGAGTCAAGCGAATTTCCGGTCTCATCTACGAGGAGAC 241081 Query 16552 TCGTGATGTTTTGAAGATCTTCCT 16575 || | ||| | ||| | ||||| Sbjct 241082 CCGAGGTGTCCTCAAGTTGTTCCT 241105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074956794338