Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xanthophyllomyces_20dendrorhous_20[genbank_20GCA_5F001007165.2_20201 5-05-09] 266 sequences; 19,519,467 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq41 374 1e-98 seq83 165 1e-35 seq248 93.3 6e-14 >seq41 Length=2088178 Score = 374 bits (414), Expect = 1e-98 Identities = 774/1147 (67%), Gaps = 6/1147 (1%) Strand=Plus/Plus Query 195732 ACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACT 195791 |||||| || || || |||||||| || ||||| || | | || || || || ||| Sbjct 1372549 ACTTCAACGACTCCCAGCGACAGGCTACCAAGGATGCCGGAGTCATCGCCGGACTTAACG 1372608 Query 195792 GTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACA 195851 ||| |||| ||||| || || || || || || || ||||| ||||| |||||||| Sbjct 1372609 TTCTCCGAATCATCAACGAGCCTACCGCCGCCGCCATCGCTTACGGTCTTGACAAGAAGG 1372668 Query 195852 AGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCAC 195911 || || || || || | ||||| ||||| || || || || || |||||||| | Sbjct 1372669 TCATCGGTGAGAAGAACGTTCTCATCTTCGATCTTGGAGGAGGAACCTTCGATGTCTCCC 1372728 Query 195912 TTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAG 195971 |||| | || || | ||||| ||||| || ||| | ||||| || || || || | | Sbjct 1372729 TTCTTACCATCGAGGAGGGTATCTTCGAGGTCAAGTCCACTGCCGGAGACACCCACTTGG 1372788 Query 195972 GTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTT-GTCTGATGAGTTCCGTCGAAAG 196030 | || || || |||||| || ||| || || || ||| | |||||| |||||| Sbjct 1372789 GAGGAGAGGACTTCGATAACCGACTTGTCAACCACTTCGTCC-AGGAGTTCAAGCGAAAG 1372847 Query 196031 AATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAA 196090 || ||||| || || | ||||| || | |||||||| || || | || || ||||| Sbjct 1372848 AACAAGAAGGACATCACCGGAAACCCCCGAGCTCTTCGACGACTCCGAACCGCCTGTGAG 1372907 Query 196091 CGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTT 196150 || || || ||||| ||||||||| | || || || | | ||||| || || | || Sbjct 1372908 CGAGCTAAGCGAACCCTCTCTTCTGCCGCCCAGACCACCATCGAGATCGACTCCCTCTTC 1372967 Query 196151 GACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGAT 196210 ||||||||||||||||| || | | || || || || || || ||| | | ||| Sbjct 1372968 GACGGAATTGACTTCTACACTTCCCTCACTCGAGCTCGATTCGAGGAGCTCTGCCAGGAT 1373027 Query 196211 TTGTT--TAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATA 196268 | || ||||| ||||| || || || | || || || || |||||||| | Sbjct 1373028 CTCTTCCGAGGAA--CCATGGATCCCGTCGAGAAGGTCCTGAAGGATGCCAAGATGGACA 1373085 Query 196269 AGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAAC 196328 |||| | || | || |||||||| || |||||||| || || || || ||||| || Sbjct 1373086 AGTCCACTGTCCACGAGATTGTCCTCGTCGGAGGATCCACTCGAATCCCCAAGATCCAGA 1373145 Query 196329 AGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAG 196388 || | | ||| ||||||| || || ||||| | || ||||| ||||| | Sbjct 1373146 AGCTTGTCTCTGACTTCTTCTCCGGAAAGGAGCCCAACAAGTCCATTAACCCTGATGAGG 1373205 Query 196389 CAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACAATAATAACG 196448 | |||||||| || || ||||| ||||| || |||||||| || | | | | | || Sbjct 1373206 CTGTTGCTTACGGAGCCGCCGTCCAGGCCGCCATTCTCTCTGGAGATACCTCTGAGAAGA 1373265 Query 196449 TCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTG 196508 ||| || | || || || |||||||| || | ||| ||| |||| || || || | Sbjct 1373266 CCCAGGACTTGCTCCTCCTCGATGTTGCCCCTCTTTCCACTGGTATTGAGACCGCTGGAG 1373325 Query 196509 GTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAAGAAGGAACAAGTCT 196568 ||||| | ||| | || | | ||||| || |||| || |||||| | ||| Sbjct 1373326 GTGTTTTCACTGCTTTGATCAAGCGAAACACCACCGTTCCTACCAAGAAGTCCGAGATCT 1373385 Query 196569 TTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTATATGAAGGAGAACGCT 196628 | || || || | || || || || || |||| ||| || || | || ||||| || Sbjct 1373386 TCTCCACTTACGCTGACAACCAGCCCGGAGTTCTTATCCAGGTCTTCGAGGGAGAGCGAG 1373445 Query 196629 CCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCAC 196688 |||| | ||||| ||| | | || |||| ||||| | | || || || |||| | Sbjct 1373446 CCCGAACTAAGGACAACAACTTGCTCGGAAAGTTCGAGCTTTCTGGTATCCCCCCTGCGC 1373505 Query 196689 CCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAATGGAATTCTAAACG 196748 || |||| ||||| ||||| | || |||||| || || || || || | |||| Sbjct 1373506 CCCGAGGAGTTCCCCAGATCGAGGTCACCTTCGACATTGATGCCAACTCTATCTTGAACG 1373565 Query 196749 TCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGATTACCAATGACAAGG 196808 || | |||| |||||| | | || || || | ||||| || ||||| || |||| Sbjct 1373566 TCTCTGCTGCCGACAAGACCACCGGAAAGTCCAACAAGATCACCATCACCAACGATAAGG 1373625 Query 196809 GGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGGAAAAGTACAGGGAAG 196868 | || || || |||||||| ||||| || ||||| || || || ||||||| ||| | Sbjct 1373626 GACGACTCTCCAAGGAGGACATTGAGCGAATGGTCTCCGAGGCTGAGAAGTACAAGGACG 1373685 Query 196869 AAGACGA 196875 | || || Sbjct 1373686 AGGATGA 1373692 >seq83 Length=2340728 Score = 165 bits (182), Expect = 1e-35 Identities = 151/191 (79%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 171883 CTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAA 171942 ||||| ||||| || ||||| |||||||||||||| || || || ||||| ||| |||| Sbjct 220891 CTTACGGGAAAGACCATCACTCTCGAGGTTGAGTCATCCGATACTATCGACAACGTCAAG 220832 Query 171943 GCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGT 172002 |||||||| || |||||||| || || || || |||||||| ||| | || || || || Sbjct 220831 GCCAAGATCCAGGATAAGGAGGGTATCCCTCCTGATCAGCAGCGATTGATCTTCGCCGGA 220772 Query 172003 AAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTA 172062 || |||||||| || ||||| ||||| | || |||||| | || ||||||||||| || Sbjct 220771 AAGCAGCTTGAGGACGGACGAACCCTGTCGGACTACAACATCCAGAAGGAGTCTACCCTT 220712 Query 172063 CACCTTGTTCT 172073 || || ||||| Sbjct 220711 CATCTCGTTCT 220701 Score = 143 bits (158), Expect = 4e-29 Identities = 133/169 (79%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 171883 CTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAA 171942 ||||| ||||| || ||||| |||||||||||||| || || || ||||| ||| |||| Sbjct 221258 CTTACGGGAAAGACCATCACTCTCGAGGTTGAGTCATCCGATACTATCGACAACGTCAAG 221199 Query 171943 GCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGT 172002 |||||||| || |||||||| || || || || |||||||| ||| | || || || || Sbjct 221198 GCCAAGATCCAGGATAAGGAGGGTATCCCTCCTGATCAGCAGCGATTGATCTTCGCCGGA 221139 Query 172003 AAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGG 172051 || |||||||| || ||||| ||||| | || |||||| | || |||| Sbjct 221138 AAGCAGCTTGAGGACGGACGAACCCTGTCGGACTACAACATCCAGAAGG 221090 Score = 143 bits (158), Expect = 4e-29 Identities = 133/169 (79%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 171883 CTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAA 171942 ||||| ||||| || ||||| |||||||||||||| || || || ||||| ||| |||| Sbjct 221622 CTTACGGGAAAGACCATCACTCTCGAGGTTGAGTCATCCGATACTATCGACAACGTCAAG 221563 Query 171943 GCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGT 172002 |||||||| || |||||||| || || || || |||||||| ||| | || || || || Sbjct 221562 GCCAAGATCCAGGATAAGGAGGGTATCCCTCCTGATCAGCAGCGATTGATCTTCGCCGGA 221503 Query 172003 AAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGG 172051 || |||||||| || ||||| ||||| | || |||||| | || |||| Sbjct 221502 AAGCAGCTTGAGGACGGACGAACCCTGTCGGACTACAACATCCAGAAGG 221454 >seq248 Length=2255592 Score = 93.3 bits (102), Expect = 6e-14 Identities = 75/91 (82%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || |||||||| || || || |||||||||||||| ||||| || Sbjct 645351 ATGCAGATCTTCGTCAAGACCCTTACAGGGAAGACCATCACCCTCGAGGTGGAGTCTTCG 645410 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTC 171952 ||||| ||||| ||| |||| |||||| ||| Sbjct 645411 GACACCATCGACAACGTCAAGGCCAAGGTTC 645441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657860212607520