Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xanthophyllomyces_20dendrorhous_20[genbank_20GCA_5F001007165.2_20201 5-05-09] 266 sequences; 19,519,467 total letters Query= NC_027984.1 Length=57677 Score E Sequences producing significant alignments: (Bits) Value seq170 1265 0.0 seq185 320 6e-83 >seq170 Length=4830 Score = 1265 bits (1402), Expect = 0.0 Identities = 701/701 (100%), Gaps = 0/701 (0%) Strand=Plus/Minus Query 22113 GCCTTaaaaaaaTTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAG 22172 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4544 GCCTTAAAAAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAG 4485 Query 22173 CATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCAT 22232 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4484 CATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCAT 4425 Query 22233 CAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTT 22292 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4424 CAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTT 4365 Query 22293 GTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGAC 22352 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4364 GTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGAC 4305 Query 22353 GAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGC 22412 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4304 GAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGC 4245 Query 22413 CACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAG 22472 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4244 CACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAG 4185 Query 22473 CGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCA 22532 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4184 CGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCA 4125 Query 22533 TATCACCAGCTCACCGTCTTTCATTGCCATACGGAATTCCGGATGAGCATTCATCAGGCG 22592 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4124 TATCACCAGCTCACCGTCTTTCATTGCCATACGGAATTCCGGATGAGCATTCATCAGGCG 4065 Query 22593 GGCAAGAATGTGAATAAAGGCCGGATAAAACTTGTGCTTATTTTTCTTTACGGTCTTTAA 22652 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4064 GGCAAGAATGTGAATAAAGGCCGGATAAAACTTGTGCTTATTTTTCTTTACGGTCTTTAA 4005 Query 22653 AAAGGCCGTAATATCCAGCTGAACGGTCTGGTTATAGGTACATTGAGCAACTGACTGAAA 22712 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4004 AAAGGCCGTAATATCCAGCTGAACGGTCTGGTTATAGGTACATTGAGCAACTGACTGAAA 3945 Query 22713 TGCCTCAAAATGTTCTTTACGATGCCATTGGGATATATCAACGGTGGTATATCCAGTGAt 22772 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3944 TGCCTCAAAATGTTCTTTACGATGCCATTGGGATATATCAACGGTGGTATATCCAGTGAT 3885 Query 22773 ttttttCTCCATTTTAGCTTCCTTAGCTCCTGAAAATCTCG 22813 ||||||||||||||||||||||||||||||||||||||||| Sbjct 3884 TTTTTTCTCCATTTTAGCTTCCTTAGCTCCTGAAAATCTCG 3844 Score = 167 bits (184), Expect = 9e-37 Identities = 92/92 (100%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 22671 CTGAACGGTCTGGTTATAGGTACATTGAGCAACTGACTGAAATGCCTCAAAATGTTCTTT 22730 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 92 CTGAACGGTCTGGTTATAGGTACATTGAGCAACTGACTGAAATGCCTCAAAATGTTCTTT 33 Query 22731 ACGATGCCATTGGGATATATCAACGGTGGTAT 22762 |||||||||||||||||||||||||||||||| Sbjct 32 ACGATGCCATTGGGATATATCAACGGTGGTAT 1 >seq185 Length=1632 Score = 320 bits (354), Expect = 6e-83 Identities = 177/177 (100%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 22722 ATGTTCTTTACGATGCCATTGGGATATATCAACGGTGGTATATCCAGTGAtttttttCTC 22781 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1632 ATGTTCTTTACGATGCCATTGGGATATATCAACGGTGGTATATCCAGTGATTTTTTTCTC 1573 Query 22782 CATTTTAGCTTCCTTAGCTCCTGAAAATCTCGATAACTCAAAAAATACGCCCGGTAGTGA 22841 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1572 CATTTTAGCTTCCTTAGCTCCTGAAAATCTCGATAACTCAAAAAATACGCCCGGTAGTGA 1513 Query 22842 TCTTATTTCATTATGGTGAAAGTTGGAACCTCTTACGTGCCGATCAACGTCTCATTT 22898 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1512 TCTTATTTCATTATGGTGAAAGTTGGAACCTCTTACGTGCCGATCAACGTCTCATTT 1456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184444217384988