Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xanthophyllomyces_20dendrorhous_20[genbank_20GCA_5F001007165.2_20201 5-05-09] 266 sequences; 19,519,467 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq60 138 1e-27 seq83 125 8e-24 seq73 98.7 1e-15 seq144 95.1 1e-14 seq248 87.8 2e-12 >seq60 Length=747880 Score = 138 bits (152), Expect = 1e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27412 ATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGC 27471 ||||| || ||||| || || || ||||| || || |||||||| ||||| ||| | | Sbjct 85871 ATCTTCGTAAAGACCCTCACGGGTAAGACCATCACCCTTGAGGTGGAGTCTTCTGACACC 85812 Query 27472 ATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGT 27531 || | || | ||||| || || ||||||||||| |||||||| || || |||||||| Sbjct 85811 ATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCTGATCAGCAGCGA 85752 Query 27532 CTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAA 27591 || || || || |||||||| |||||||||| || ||||| | || || || |||| Sbjct 85751 CTTATCTTCGCCGGTAAGCAGCTCGAGGATGGCCGAACCCTTTCGGATTACAACATCCAG 85692 Query 27592 AAGGAATCCACTCTTCATCTAGTC 27615 || || ||||| || || || ||| Sbjct 85691 AAAGAGTCCACCCTCCACCTCGTC 85668 >seq83 Length=2340728 Score = 125 bits (138), Expect = 8e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 ||||| || ||||| || ||||| |||||||||||| |||| || | || | ||| Sbjct 220891 CTTACGGGAAAGACCATCACTCTCGAGGTTGAGTCATCCGATACTATCGACAACGTCAAG 220832 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || || ||||| |||||||| || ||||| || |||||||| | || || || || Sbjct 220831 GCCAAGATCCAGGATAAGGAGGGTATCCCTCCTGATCAGCAGCGATTGATCTTCGCCGGA 220772 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 ||||| || ||||| | || ||||| | ||||| || |||| ||||| || || ||| Sbjct 220771 AAGCAGCTTGAGGACGGACGAACCCTGTCGGACTACAACATCCAGAAGGAGTCTACCCTT 220712 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 ||||| || | || || || || || || Sbjct 220711 CATCTCGTTCTTCGACTCCGAGGAGGGCA 220683 Score = 107 bits (118), Expect = 2e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 ||||| || ||||| || ||||| |||||||||||| |||| || | || | ||| Sbjct 221258 CTTACGGGAAAGACCATCACTCTCGAGGTTGAGTCATCCGATACTATCGACAACGTCAAG 221199 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || || ||||| |||||||| || ||||| || |||||||| | || || || || Sbjct 221198 GCCAAGATCCAGGATAAGGAGGGTATCCCTCCTGATCAGCAGCGATTGATCTTCGCCGGA 221139 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGG 27595 ||||| || ||||| | || ||||| | ||||| || |||| |||| Sbjct 221138 AAGCAGCTTGAGGACGGACGAACCCTGTCGGACTACAACATCCAGAAGG 221090 Score = 107 bits (118), Expect = 2e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 ||||| || ||||| || ||||| |||||||||||| |||| || | || | ||| Sbjct 221622 CTTACGGGAAAGACCATCACTCTCGAGGTTGAGTCATCCGATACTATCGACAACGTCAAG 221563 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || || ||||| |||||||| || ||||| || |||||||| | || || || || Sbjct 221562 GCCAAGATCCAGGATAAGGAGGGTATCCCTCCTGATCAGCAGCGATTGATCTTCGCCGGA 221503 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGG 27595 ||||| || ||||| | || ||||| | ||||| || |||| |||| Sbjct 221502 AAGCAGCTTGAGGACGGACGAACCCTGTCGGACTACAACATCCAGAAGG 221454 >seq73 Length=2505705 Score = 98.7 bits (108), Expect = 1e-15 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 81026 CCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAA 81085 ||||||||||||| |||| ||||||||| ||| |||| |||||||||| ||| | Sbjct 804408 CCTTGTAGCACATAAACGGTCCACCGGTCTCAGTCTGAGACTCCAGGATGGCGTACCAGA 804349 Query 81086 TCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCTT 81145 || | || || ||||| |||||||||||||| | | ||||| || | Sbjct 804348 CCTTTTGAGCAGAAACAACCTTTCGGAATTTGCCTTCTCGCTCGTACTTCTCGAACAAGG 804289 Query 81146 CGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGT 81205 | ||||||| | | |||| || || | | | | |||||||||||||||||||| || Sbjct 804288 CTTCGAACTCGTCTCCGTAAACCTCGGACAAGCCGGGGCACTCGTTAGGGCACATAAGCG 804229 Query 81206 GCCAGTC 81212 ||||||| Sbjct 804228 GCCAGTC 804222 >seq144 Length=33835 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 64738 GTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGC 64797 || || || || ||||||||||| || ||| || || |||||||| || ||||| || Sbjct 14109 GTTGAGGGTATCTTCTTTTCTGGATCGTTCGCCTCGATCTTCTGGCTCAAGAAGCGAGGA 14168 Query 64798 CTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGGCTCCAC 64854 || ||||| || || |||||||||| ||| ||||||| |||||||||| || ||| Sbjct 14169 CTCATGCCTGGATTGACGTTTTCGAATGAGTTGATCTCGAGGGACGAGGGTCTTCAC 14225 >seq248 Length=2255592 Score = 87.8 bits (96), Expect = 2e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 ||||||||||||||||||||||| || || |||||||| || || || || || ||||| Sbjct 645948 ATTCAGGACAAGGAGGGAATTCCCCCTGATCAGCAGCGACTCATCTTCGCCGGAAAGCAG 646007 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGG 27595 || ||||| | || ||||| | ||||| || |||| |||| Sbjct 646008 CTTGAGGACGGACGAACCCTTTCGGACTACAACATCCAGAAGG 646050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570308503717920