Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xanthophyllomyces_20dendrorhous_20[genbank_20GCA_5F001007165.2_20201 5-05-09] 266 sequences; 19,519,467 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq60 168 2e-36 seq83 131 4e-25 seq248 91.5 4e-13 >seq60 Length=747880 Score = 168 bits (186), Expect = 2e-36 Identities = 159/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986 || ||||| || || ||||| || || || |||||||| |||||||| || |||||| Sbjct 85871 ATCTTCGTAAAGACCCTCACGGGTAAGACCATCACCCTTGAGGTGGAGTCTTCTGACACC 85812 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 ||||| |||||||| ||||| |||||||| |||||||| || || || ||||| ||| Sbjct 85811 ATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCTGATCAGCAGCGA 85752 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106 |||||||||||||| || |||||||| ||||| | || ||| | ||||| ||| |||| Sbjct 85751 CTTATCTTCGCCGGTAAGCAGCTCGAGGATGGCCGAACCCTTTCGGATTACAACATCCAG 85692 Query 178107 AAAGAATCAACACTGCATCTTGT 178129 ||||| || || || || || || Sbjct 85691 AAAGAGTCCACCCTCCACCTCGT 85669 >seq83 Length=2340728 Score = 131 bits (144), Expect = 4e-25 Identities = 150/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 177941 TCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAA 178000 ||| || ||||| || ||||| |||||||| || || || || ||||| |||||||| Sbjct 220892 TCTTACGGGAAAGACCATCACTCTCGAGGTTGAGTCATCCGATACTATCGACAACGTCAA 220833 Query 178001 ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGG 178060 ||||| ||||| || || || |||||||| || ||||| ||| | ||||||||||| Sbjct 220832 GGCCAAGATCCAGGATAAGGAGGGTATCCCTCCTGATCAGCAGCGATTGATCTTCGCCGG 220773 Query 178061 AAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACT 178120 ||| ||||| || || ||| | || || | || || ||| |||| || || || || || Sbjct 220772 AAAGCAGCTTGAGGACGGACGAACCCTGTCGGACTACAACATCCAGAAGGAGTCTACCCT 220713 Query 178121 GCATCTTGTTTTGAGACTCAGA 178142 ||||| ||| | ||||| || Sbjct 220712 TCATCTCGTTCTTCGACTCCGA 220691 Score = 114 bits (126), Expect = 3e-20 Identities = 126/168 (75%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 177941 TCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAA 178000 ||| || ||||| || ||||| |||||||| || || || || ||||| |||||||| Sbjct 221259 TCTTACGGGAAAGACCATCACTCTCGAGGTTGAGTCATCCGATACTATCGACAACGTCAA 221200 Query 178001 ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGG 178060 ||||| ||||| || || || |||||||| || ||||| ||| | ||||||||||| Sbjct 221199 GGCCAAGATCCAGGATAAGGAGGGTATCCCTCCTGATCAGCAGCGATTGATCTTCGCCGG 221140 Query 178061 AAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||| ||||| || || ||| | || || | || || ||| |||| || Sbjct 221139 AAAGCAGCTTGAGGACGGACGAACCCTGTCGGACTACAACATCCAGAA 221092 Score = 114 bits (126), Expect = 3e-20 Identities = 126/168 (75%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 177941 TCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAA 178000 ||| || ||||| || ||||| |||||||| || || || || ||||| |||||||| Sbjct 221623 TCTTACGGGAAAGACCATCACTCTCGAGGTTGAGTCATCCGATACTATCGACAACGTCAA 221564 Query 178001 ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGG 178060 ||||| ||||| || || || |||||||| || ||||| ||| | ||||||||||| Sbjct 221563 GGCCAAGATCCAGGATAAGGAGGGTATCCCTCCTGATCAGCAGCGATTGATCTTCGCCGG 221504 Query 178061 AAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||| ||||| || || ||| | || || | || || ||| |||| || Sbjct 221503 AAAGCAGCTTGAGGACGGACGAACCCTGTCGGACTACAACATCCAGAA 221456 >seq248 Length=2255592 Score = 91.5 bits (100), Expect = 4e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 178006 AGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAAC 178065 ||||||||||||| || ||||| || || || ||||| ||||| |||||||||||||| | Sbjct 645946 AGATTCAGGACAAGGAGGGAATTCCCCCTGATCAGCAGCGACTCATCTTCGCCGGAAAGC 646005 Query 178066 AGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 |||| || || ||| | || ||| | || || ||| |||| || Sbjct 646006 AGCTTGAGGACGGACGAACCCTTTCGGACTACAACATCCAGAA 646048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203727097533604