Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xanthophyllomyces_20dendrorhous_20[genbank_20GCA_5F001600435.1_20201 6-03-01] 43 sequences; 19,108,479 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq13 120 3e-22 seq19 113 5e-20 seq6 95.1 1e-14 seq5 87.8 2e-12 >seq13 Length=590245 Score = 120 bits (132), Expect = 3e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 117027 CCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTT 117086 |||| | |||||| ||||| |||||||| ||||| ||||| |||||||||| || | Sbjct 19761 CCTTTGCCGAGCGACTGGTCGCCTTCGCTGCCGTTGAGGGTATCTTCTTTTCTGGATCGT 19702 Query 117087 TCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACG 117146 ||||| | || || ||||||||||| || || |||||||| || |||| || || | Sbjct 19701 TCGCCTCGATCTTCTGGCTCAAGAAGCGAGGACTCATGCCTGGATTGACGTTTTCGAATG 19642 Query 117147 AGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACT 117182 || | ||||| |||||||||||||| || ||||| Sbjct 19641 AGTTGATCTCGAGGGACGAGGGTCTTCACACCGACT 19606 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 116736 AGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACG 116795 |||| || || ||| ||||| ||||||| ||| ||| || || |||| |||| Sbjct 20228 AGCGACACTTTATCTCTCACGTCTTGGCCTTCTTCAGTAGCAGTGATGGAGTCGTGAACG 20169 Query 116796 AGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACG 116855 |||||||| ||||||| ||| | ||||| || ||| |||||||| || ||||| |||| Sbjct 20168 AGAATCTGCTCGAGCGATTCTCCCAGGAAGTACAGTCTGCCGAGGCCCGATGCTTTTACG 20109 Query 116856 GCTTTCAGATC 116866 | || |||||| Sbjct 20108 GATTCCAGATC 20098 >seq19 Length=309173 Score = 113 bits (124), Expect = 5e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40696 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGC 40755 || |||||||| || |||||||| || ||||||||| | || || || | | |||| | Sbjct 224745 ATCTTCGTAAAGACCCTCACGGGTAAGACCATCACCCTTGAGGTGGAGTCTTCTGACACC 224804 Query 40756 GTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACG 40814 | | |||| |||||| || || | ||||| || || || ||| | || ||||| || Sbjct 224805 ATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCTGATCAGCAGCG 224863 Query 40815 ACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA 40874 ||| |||| ||| || || ||||| || || | || ||||| || ||||||||||| Sbjct 224864 ACTTATCTTCGCCGGTAAGCAGCTCGAGGATGGCCGAACCCTTTCGGATTACAACATCCA 224923 Query 40875 GAAGGAGGCCACGCTGCATCTAGT 40898 ||||||| |||| || || || || Sbjct 224924 GAAGGAGTCCACCCTCCACCTCGT 224947 >seq6 Length=1120801 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 || ||||| || |||||||| |||| || || | |||| | | | |||| |||| Sbjct 511847 CTTACGGGAAAGACCATCACTCTCGAGGTTGAGTCATCCGATACTATCGACAACG-TCAA 511905 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 || || || | || || ||||| ||||| | || ||||| ||| | |||| ||| || Sbjct 511906 GGCCAAGATCCAGGATAAGGAGGGTATCCCTCCTGATCAGCAGCGATTGATCTTCGCCGG 511965 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCT 40889 || ||||| || |||| || ||||| ||||||||||||||||||||| | || || Sbjct 511966 AAAGCAGCTTGAGGACGGACGAACCCTGTCGGACTACAACATCCAGAAGGAGTCTACCCT 512025 Query 40890 GCATCTAGT 40898 ||||| || Sbjct 512026 TCATCTCGT 512034 Score = 84.2 bits (92), Expect = 2e-11 Identities = 122/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 || ||||| || |||||||| |||| || || | |||| | | | |||| |||| Sbjct 511483 CTTACGGGAAAGACCATCACTCTCGAGGTTGAGTCATCCGATACTATCGACAACG-TCAA 511541 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 || || || | || || ||||| ||||| | || ||||| ||| | |||| ||| || Sbjct 511542 GGCCAAGATCCAGGATAAGGAGGGTATCCCTCCTGATCAGCAGCGATTGATCTTCGCCGG 511601 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 || ||||| || |||| || ||||| ||||||||||||||||||| Sbjct 511602 AAAGCAGCTTGAGGACGGACGAACCCTGTCGGACTACAACATCCAGAAGG 511651 >seq5 Length=1443891 Score = 87.8 bits (96), Expect = 2e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 40777 ATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAG 40836 |||| ||||| ||||| || ||| | || ||||| |||||||||| ||| || || ||| Sbjct 854395 ATTCAGGACAAGGAGGGAATTCCCCCTGATCAGCAGCGACTCATCTTCGCCGGAAAGCAG 854336 Query 40837 CTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 || || |||| || ||||| ||||||||||||||||||| Sbjct 854335 CTTGAGGACGGACGAACCCTTTCGGACTACAACATCCAGAAGG 854293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218923069680