Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xanthophyllomyces_20dendrorhous_20[genbank_20GCA_5F001600435.1_20201 6-03-01] 43 sequences; 19,108,479 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq15 100 4e-17 seq1 95.1 2e-15 seq2 86.0 1e-12 >seq15 Length=542195 Score = 100 bits (110), Expect = 4e-17 Identities = 113/149 (76%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || || | |||| |||||||| |||||||| || ||||||||||| || || Sbjct 373390 GCCAAGCGACACCGAAAGATC-CTTCGAGACAACATCCAGGGTATCACCAAGCCTGCCAT 373448 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || || || || |||||||||||||| |||| || | |||| || |||| Sbjct 373449 CCGACGACTTGCGCGACGAGGTGGAGTCAAGCGAATCTCCGGTCTCATCTACGAGGAGAC 373508 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGA 16580 || | ||| | ||| | |||||| ||| Sbjct 373509 CCGAGGTGTCCTCAAGCTGTTCCTCGAGA 373537 Score = 100 bits (110), Expect = 4e-17 Identities = 113/149 (76%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || || | |||| |||||||| |||||||| || ||||||||||| || || Sbjct 412026 GCCAAGCGACACCGAAAGATC-CTTCGAGACAACATCCAGGGTATCACCAAGCCTGCCAT 411968 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || || || || |||||||||||||| |||| || | |||| || |||| Sbjct 411967 CCGACGACTTGCGCGACGAGGTGGAGTCAAGCGAATCTCCGGTCTCATCTACGAGGAGAC 411908 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGA 16580 || | ||| | ||| | |||||| ||| Sbjct 411907 CCGAGGTGTCCTCAAGCTGTTCCTCGAGA 411879 >seq1 Length=2328526 Score = 95.1 bits (104), Expect = 2e-15 Identities = 112/149 (75%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || || | |||| ||||||||||| ||||| || ||||||||||| || || Sbjct 2302210 GCCAAGCGACACCGAAAGATC-CTTCGAGATAATATCCAGGGTATCACCAAGCCTGCCAT 2302152 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || || || || |||||||||||||| | || || | | || || |||| Sbjct 2302151 CCGACGACTTGCGCGACGAGGTGGAGTCAAGCGAATTTCCGGCCTTATTTACGAGGAGAC 2302092 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGA 16580 || | |||| | ||| | |||||| ||| Sbjct 2302091 CCGAGGTGTTCTCAAGCTGTTCCTCGAGA 2302063 Score = 93.3 bits (102), Expect = 7e-15 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| |||| || || || |||||||| || ||||||||||| || | Sbjct 2030413 CGCCAAGCGACACCGCAAGATC-CTCCGTGACAACATCCAGGGGATCACCAAGCCGGCGA 2030355 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || || || || || || ||||||||||| ||||||| | |||| || |||| Sbjct 2030354 TCCGACGACTTGCCCGACGAGGAGGAGTCAAGCGGATCTCTGGGCTCATCTACGAGGAGA 2030295 Query 16551 TTCGTGATGTTTTGAAGATCTTCCT 16575 || | ||| | ||| | ||||| Sbjct 2030294 CCCGGGGTGTGCTCAAGCTGTTCCT 2030270 Score = 93.3 bits (102), Expect = 7e-15 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| |||| || || || |||||||| || ||||||||||| || | Sbjct 2069715 CGCCAAGCGACACCGCAAGATC-CTCCGTGACAACATCCAGGGGATCACCAAGCCGGCGA 2069773 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || || || || || || ||||||||||| ||||||| | |||| || |||| Sbjct 2069774 TCCGACGACTTGCCCGACGAGGAGGAGTCAAGCGGATCTCTGGGCTCATCTACGAGGAGA 2069833 Query 16551 TTCGTGATGTTTTGAAGATCTTCCT 16575 || | ||| | ||| | ||||| Sbjct 2069834 CCCGGGGTGTGCTCAAGCTGTTCCT 2069858 >seq2 Length=2005798 Score = 86.0 bits (94), Expect = 1e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || || | ||| |||||||||||||||||| || || || ||||| || || Sbjct 243253 GCCAAGCGACACCGAAAGAT-TCTTCGAGATAACATCCAGGGTATTACTAAGCCTGCCAT 243311 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || || || || |||||||||||||| | || || | |||| || |||| Sbjct 243312 CCGACGACTTGCGCGACGAGGTGGAGTCAAGCGAATTTCCGGTCTCATCTACGAGGAGAC 243371 Query 16552 TCGTGATGTTTTGAAGATCTTCCT 16575 || | ||| | ||| | ||||| Sbjct 243372 CCGAGGTGTCCTCAAGTTGTTCCT 243395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075160684799