Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xanthophyllomyces_20dendrorhous_20[genbank_20GCA_5F001600435.1_20201 6-03-01] 43 sequences; 19,108,479 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq19 134 3e-26 seq6 107 5e-18 seq5 86.0 1e-11 >seq19 Length=309173 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199415 CTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCA 199474 || ||||| |||||||| || |||||||| |||| |||||| || | | || | ||| Sbjct 224953 CTAAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGAAAGGGTTCGGCCA 224894 Query 199475 TCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGC 199534 || || |||||||| ||||||||||| || |||||||| || || ||||||||| Sbjct 224893 TCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGATCAGGGGGAATTCCTTCCTTG 224834 Query 199535 TCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATC 199594 ||||| ||||| ||| ||| |||| |||||| | | || || || | ||||| Sbjct 224833 TCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATG 224774 Query 199595 GTCTTACCCGTGAGAGTTTTCACAAAAAT 199623 |||||||||||||| || || || || || Sbjct 224773 GTCTTACCCGTGAGGGTCTTTACGAAGAT 224745 >seq6 Length=1120801 Score = 107 bits (118), Expect = 5e-18 Identities = 145/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| |||| || || || || || || |||||||| |||| ||||||||| | || || Sbjct 512047 TCGGAGTCGAAGAACGAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAGGGT 511988 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||| || || |||||||||||||||||||| | |||||||| || ||| || || Sbjct 511987 TCGTCCGTCCTCAAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGATCAGGAGGGATACC 511928 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || ||||| ||||| ||| ||| |||| || || | || || || || | Sbjct 511927 CTCCTTATCCTGGATCTTGGCCTTGACGTTGTCGATAGTATCGGATGACTCAACCTCGAG 511868 Query 199588 CGTGATCGTCTTACCCGTGAGA 199609 ||||| ||||| ||||| ||| Sbjct 511867 AGTGATGGTCTTTCCCGTAAGA 511846 Score = 91.5 bits (100), Expect = 3e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| ||||||||| | || || | ||| || || ||||||||||||||||||| Sbjct 511651 CCTTCTGGATGTTGTAGTCCGACAGGGTTCGTCCGTCCTCAAGCTGCTTTCCGGCGAAGA 511592 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | | |||||||| || ||| || || || ||||| ||||| ||| ||| | Sbjct 511591 TCAATCGCTGCTGATCAGGAGGGATACCCTCCTTATCCTGGATCTTGGCCTTGACGTTGT 511532 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609 ||| || || | || || || || | ||||| ||||| ||||| ||| Sbjct 511531 CGATAGTATCGGATGACTCAACCTCGAGAGTGATGGTCTTTCCCGTAAGA 511482 >seq5 Length=1443891 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| ||||||||| | | || | ||| || || ||||||||||||||||||| Sbjct 854293 CCTTCTGGATGTTGTAGTCCGAAAGGGTTCGTCCGTCCTCAAGCTGCTTTCCGGCGAAGA 854352 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCT 199544 |||| |||||||| || || |||||| || |||||||||| Sbjct 854353 TGAGTCGCTGCTGATCAGGGGGAATTCCCTCCTTGTCCTGAATCT 854397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178920950487881