Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xanthophyllomyces_20dendrorhous_20[genbank_20GCA_5F001600435.1_20201 6-03-01] 43 sequences; 19,108,479 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq4 122 1e-21 seq10 114 2e-19 seq1 107 2e-17 seq2 95.1 1e-13 seq13 91.5 2e-12 seq3 87.8 2e-11 >seq4 Length=1462579 Score = 122 bits (134), Expect = 1e-21 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| || || ||| | | ||||| || ||||||||||||||||| || | | Sbjct 1234229 GCTTGGAAAGCTCTCCGGGTAGGATCAATCGGACGGCGGTCTGGATCTCTCGAGAAGAAA 1234288 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 ||||| |||||| | |||| || ||||||| | ||| || |||| | Sbjct 1234289 TCGTGGACTTCTTGTTGTACGAAGCCAACTTGCTGGCCTCGCCGGCGACTCGCTCGAAGA 1234348 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | |||||||| || ||||| | || ||||| | |||||||||||| || |||||||| Sbjct 1234349 TATCGTTGACGAAAGAGTTAAGGATAGACATGGCCTTGTTGGAGATACCAGTGTCGGGGT 1234408 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 | ||||||||||| |||||||| ||| | |||||||| Sbjct 1234409 GGACCTGCTTGAGGACCTTGTAAATGTAAGACGAGTA 1234445 >seq10 Length=671140 Score = 114 bits (126), Expect = 2e-19 Identities = 158/220 (72%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| || || ||| | | ||||| || ||||| |||||||| || || | || Sbjct 196129 GCTTGGAGAGCTCTCCGGGGAGGATCAATCGAACGGCAGTCTGGATTTCTCGGGAAGAGA 196188 Query 1254403 TCGTG---TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 |||| || |||| ||| |||| || |||||| | ||| || || | Sbjct 196189 TCGTCGACTTTTTGTTGTACGAA---GCCAACTTGCTGGCCTCACCGGCGACTCGCTCAA 196245 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 ||||||||||| || ||||| | || ||||| | |||||||||||| || ||||| Sbjct 196246 AGATGTCGTTGACGAAAGAGTTGAGGATAGACATGGCCTTGTTGGAGATACCAGTGTCGG 196305 Query 1254520 GGTGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 |||| ||||||||||| |||||||||||| |||||||||| Sbjct 196306 GGTGGACCTGCTTGAGGACCTTGTAGATGTACGACGAGTA 196345 >seq1 Length=2328526 Score = 107 bits (118), Expect = 2e-17 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| || || ||| | | ||||| || |||||||||||||| || || | || Sbjct 1191097 GCTTGGAAAGCTCTCCGGGAAGGATCAATCGGACGGCGGTCTGGATTTCTCGGGAAGAGA 1191038 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 |||| |||||| | |||| || |||||| | ||| || |||| | Sbjct 1191037 TCGTTGACTTCTTGTTGTATGAAGCCAACTTGCTGGCCTCACCGGCGACTCGCTCGAAAA 1190978 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | |||||||| || ||||| | || ||||| | |||||||||||| || |||||||| Sbjct 1190977 TATCGTTGACGAAAGAGTTGAGGATAGACATGGCCTTGTTGGAGATACCAGTGTCGGGGT 1190918 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 | ||||||||||| |||||||| ||| | || ||||| Sbjct 1190917 GGACCTGCTTGAGGACCTTGTAAATGTAGGAAGAGTA 1190881 >seq2 Length=2005798 Score = 95.1 bits (104), Expect = 1e-13 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1630201 TTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGGCCTTC 1630260 |||||||| | |||||||||||||| || ||||| || ||||||||||| || ||| | Sbjct 805662 TTGGAGATCATGGCGCACTGTTTGAGAGTATCGTAAATACCCTCGATCGAATCATCCTGC 805603 Query 1630261 ATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCGGCGTTGAAGAGC 1630317 ||| |||| | ||||| ||||| || ||||| | || ||||||||||| ||| Sbjct 805602 ATGGCCACCAAGAAGCAAGACGAAAGCTGGGGGTGAGGAGTACCGGCGTTGAATAGC 805546 >seq13 Length=590245 Score = 91.5 bits (100), Expect = 2e-12 Identities = 115/154 (75%), Gaps = 8/154 (5%) Strand=Plus/Plus Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278 || |||||||| || |||||||||||||| ||||| | | ||| || || || ||| Sbjct 19659 CCAGGCATGAGTCCTCGCTTCTTGAGCCAGAAGATCGAGGCGAACGATCCAGAAAAGAAG 19718 Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338 || ||||| ||||| || ||| ||| || |||||||||||| ||||||| || | | Sbjct 19719 ATACCCTCAACGGCAGCGAAGGCGACCAGTCGCTCGGCAAAG--GTCGAGG---TCTTGG 19773 Query 869339 TTG--ATCCACTTCATCGCCCAGTCGGCCTTTTT 869370 | |||||||| | |||||||| ||||||| Sbjct 19774 ACGAAATCCACTTTAGAGCCCAGTC-ACCTTTTT 19806 >seq3 Length=1532821 Score = 87.8 bits (96), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 19098 CTCGGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATC 19157 || || ||||| |||||||||||||| ||||| ||||||||| |||||||| || || Sbjct 1136674 CTGGGAGAGCCCTGCTTTGACAAGATGGAGGCTTTGCTCGCCCATGCCATGCTCTCCATT 1136615 Query 19158 CCGGCCACCAAGGGATTCGAGATTGG 19183 || ||||||||| ||||||||||| Sbjct 1136614 CCTTCCACCAAGGCTTTCGAGATTGG 1136589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107135671218631