Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xanthophyllomyces_20dendrorhous_20[genbank_20GCA_5F001600435.1_20201 6-03-01] 43 sequences; 19,108,479 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq4 158 2e-32 seq1 149 1e-29 seq10 136 6e-26 >seq4 Length=1462579 Score = 158 bits (174), Expect = 2e-32 Identities = 189/254 (74%), Gaps = 2/254 (1%) Strand=Plus/Plus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 ||||||| || | |||||||||||| |||| |||||| ||| || || ||| | | || Sbjct 1234193 ACTTGGTAACTGACTTGGTACCCTCCGAGATAGCGTGCTTGGAAAGCTCTCCGGGTAGGA 1234252 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC- 1485591 ||| || ||||||||||||||||| || | |||||| |||||| || || Sbjct 1234253 TCAATCGGACGGCGGTCTGGATCTCTCGAGAAGAAATCGTGGACTTCTTGTT-GTACGAA 1234311 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 |||| || ||||||| | ||| || |||| || |||||||| || ||||| | | Sbjct 1234312 GCCAACTTGCTGGCCTCGCCGGCGACTCGCTCGAAGATATCGTTGACGAAAGAGTTAAGG 1234371 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAA 1485711 || ||||| | ||||||||||| || ||||||||| ||||||||||| ||||||||| Sbjct 1234372 ATAGACATGGCCTTGTTGGAGATACCAGTGTCGGGGTGGACCTGCTTGAGGACCTTGTAA 1234431 Query 1485712 ACAAAGGACGAGTA 1485725 | | |||||||| Sbjct 1234432 ATGTAAGACGAGTA 1234445 >seq1 Length=2328526 Score = 149 bits (164), Expect = 1e-29 Identities = 187/254 (74%), Gaps = 2/254 (1%) Strand=Plus/Minus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 |||||||||| | |||||| ||||| || | ||||||| ||| || || ||| | | || Sbjct 1191133 ACTTGGTGACCGACTTGGTTCCCTCCGAAATGGCGTGCTTGGAAAGCTCTCCGGGAAGGA 1191074 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC- 1485591 ||| || |||||||||||||| || |||| |||||| |||||| || | Sbjct 1191073 TCAATCGGACGGCGGTCTGGATTTCTCGGGAAGAGATCGTTGACTTCTTGTT-GTATGAA 1191015 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 |||| || |||||| | ||| || |||| || |||||||| || ||||| | | Sbjct 1191014 GCCAACTTGCTGGCCTCACCGGCGACTCGCTCGAAAATATCGTTGACGAAAGAGTTGAGG 1190955 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAA 1485711 || ||||| | ||||||||||| || ||||||||| ||||||||||| ||||||||| Sbjct 1190954 ATAGACATGGCCTTGTTGGAGATACCAGTGTCGGGGTGGACCTGCTTGAGGACCTTGTAA 1190895 Query 1485712 ACAAAGGACGAGTA 1485725 | |||| ||||| Sbjct 1190894 ATGTAGGAAGAGTA 1190881 >seq10 Length=671140 Score = 136 bits (150), Expect = 6e-26 Identities = 183/252 (73%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 ||||| || | |||||| ||||| |||| ||||||| ||| || || ||| | | |||| Sbjct 196095 TTGGTCACAGACTTGGTTCCCTCCGAGATGGCGTGCTTGGAGAGCTCTCCGGGGAGGATC 196154 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC-GC 1485593 | || ||||| |||||||| || |||| |||||| ||||| || || || Sbjct 196155 AATCGAACGGCAGTCTGGATTTCTCGGGAAGAGATCGTCGACTTTTTGTT-GTACGAAGC 196213 Query 1485594 CAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGAT 1485653 || || |||||| | ||| || || | ||||||||||| || ||||| | ||| Sbjct 196214 CAACTTGCTGGCCTCACCGGCGACTCGCTCAAAGATGTCGTTGACGAAAGAGTTGAGGAT 196273 Query 1485654 CGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAAC 1485713 ||||| | ||||||||||| || ||||||||| ||||||||||| |||||||| | Sbjct 196274 AGACATGGCCTTGTTGGAGATACCAGTGTCGGGGTGGACCTGCTTGAGGACCTTGTAGAT 196333 Query 1485714 AAAGGACGAGTA 1485725 | |||||||| Sbjct 196334 GTACGACGAGTA 196345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916241825893877