Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xanthophyllomyces_20dendrorhous_20[genbank_20GCA_5F001600435.1_20201 6-03-01] 43 sequences; 19,108,479 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq4 122 1e-21 seq10 113 6e-19 seq1 113 6e-19 seq13 89.7 7e-12 seq2 89.7 7e-12 >seq4 Length=1462579 Score = 122 bits (134), Expect = 1e-21 Identities = 174/244 (71%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 |||||||| | || |||||||| ||||||||||| |||||| || | | ||| Sbjct 1234445 TACTCGTCTTACATTTACAAGGTCCTCAAGCAGGTCCACCCCGACACTGGT-----ATC- 1234392 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||||||||| ||||||| ||| | ||||| || |||||||| || |||| || ||| | Sbjct 1234391 TCCAACAAGGCCATGTCTATCCTTAACTCTTTCGTCAACGATATCTTCGAGCGAGTCGCC 1234332 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 ||||||| | |||| | ||||||| |||||| | || |||||| Sbjct 1234331 GGCGAGGCCAGCAAGTTGGCTTCGTACAACAAGAAGTCCACGATTTCTTCTCGAGAGATC 1234272 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 ||||||||||| || ||||| | | ||| || || ||| |||||| |||| ||||| Sbjct 1234271 CAGACCGCCGTCCGATTGATCCTACCCGGAGAGCTTTCCAAGCACGCTATCTCGGAGGGT 1234212 Query 725139 ACCA 725142 |||| Sbjct 1234211 ACCA 1234208 >seq10 Length=671140 Score = 113 bits (124), Expect = 6e-19 Identities = 172/244 (70%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 |||||||| | ||||||||||| ||||||||||| |||||| || | | ||| Sbjct 196345 TACTCGTCGTACATCTACAAGGTCCTCAAGCAGGTCCACCCCGACACTGGT-----ATC- 196292 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||||||||| ||||||| ||| | ||||| || ||||||||||| | || || ||| | Sbjct 196291 TCCAACAAGGCCATGTCTATCCTCAACTCTTTCGTCAACGACATCTTTGAGCGAGTCGCC 196232 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 |||||| | |||| | |||||| |||||| | || || ||| Sbjct 196231 GGTGAGGCCAGCAAGTTGGCTTCGTACAACAAAAAGTCGACGATCTCTTCCCGAGAAATC 196172 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 ||||| ||||| || ||||| | | ||| || || ||| ||||||| |||| ||||| Sbjct 196171 CAGACTGCCGTTCGATTGATCCTCCCCGGAGAGCTCTCCAAGCACGCCATCTCGGAGGGA 196112 Query 725139 ACCA 725142 |||| Sbjct 196111 ACCA 196108 >seq1 Length=2328526 Score = 113 bits (124), Expect = 6e-19 Identities = 172/244 (70%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| |||| || |||||||| ||||||||||| |||||| || | | ||| Sbjct 1190881 TACTCTTCCTACATTTACAAGGTCCTCAAGCAGGTCCACCCCGACACTGGT-----ATC- 1190934 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||||||||| ||||||| ||| | ||||| || |||||||| || |||| || ||| | Sbjct 1190935 TCCAACAAGGCCATGTCTATCCTCAACTCTTTCGTCAACGATATTTTCGAGCGAGTCGCC 1190994 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 |||||| | |||| | ||||||| |||||| | || || ||| Sbjct 1190995 GGTGAGGCCAGCAAGTTGGCTTCATACAACAAGAAGTCAACGATCTCTTCCCGAGAAATC 1191054 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 ||||||||||| || ||||| | | ||| || || ||| ||||||| | || ||||| Sbjct 1191055 CAGACCGCCGTCCGATTGATCCTTCCCGGAGAGCTTTCCAAGCACGCCATTTCGGAGGGA 1191114 Query 725139 ACCA 725142 |||| Sbjct 1191115 ACCA 1191118 >seq13 Length=590245 Score = 89.7 bits (98), Expect = 7e-12 Identities = 115/153 (75%), Gaps = 8/153 (5%) Strand=Plus/Minus Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGAT--CAACAAGGAGGGCCTCGACACTTTGCCGA 1456180 ||||||| |||||||| | |||||||| | | | || ||||||| ||||||||| Sbjct 19806 AAAAAGGT-GACTGGGCTCTAAAGTGGATTTCGTCCAAGA---CCTCGAC-CTTTGCCGA 19752 Query 1456181 GCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCAT 1456239 ||| || |||| ||| || || || ||||| ||||| || || || ||| | | || Sbjct 19751 GCGACTGGTCGCCTTCGCTGCCGTTGAGGGTATCTTCTTTTCTGGATCGTTCGCCTCGAT 19692 Query 1456240 CTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 ||| |||||||||||||| || |||||||| || Sbjct 19691 CTTCTGGCTCAAGAAGCGAGGACTCATGCCTGG 19659 >seq2 Length=2005798 Score = 89.7 bits (98), Expect = 7e-12 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 259930 GCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAA 259989 ||| || || ||||| || || | ||| ||| |||||| ||||| || ||| |||| | Sbjct 805546 GCTATTCAACGCCGGTACTCCTCACCCCCAGCTTTCGTCTTGCTTCTTGGTGGCCATGCA 805605 Query 259990 GGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAA 260046 || |||||||||||||| || || || || ||||| |||||||| | |||||||| Sbjct 805606 GGATGATTCGATCGAGGGTATTTACGATACTCTCAAACAGTGCGCCATGATCTCCAA 805662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177807052570966